Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Sdc1P18828 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Best4-ps-201ENSMUST00000129783 1380 ntBASIC11.16□□□□□ -0.62
Sdc1P18828 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC11.16□□□□□ -0.62
Sdc1P18828 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC11.16□□□□□ -0.62
Sdc1P18828 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Wfs1-201ENSMUST00000043964 3787 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC11.16□□□□□ -0.62
Sdc1P18828 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
Sdc1P18828 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
Sdc1P18828 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC11.16□□□□□ -0.62
Sdc1P18828 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC11.16□□□□□ -0.62
Sdc1P18828 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC11.16□□□□□ -0.62
Sdc1P18828 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Gm25016-201ENSMUST00000158399 131 ntBASIC11.16□□□□□ -0.62
Sdc1P18828 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC11.16□□□□□ -0.62
Sdc1P18828 Gm5682-201ENSMUST00000173402 505 ntBASIC11.16□□□□□ -0.62
Sdc1P18828 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
Sdc1P18828 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
Sdc1P18828 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC11.16□□□□□ -0.62
Sdc1P18828 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 AC147366.1-201ENSMUST00000227671 852 ntBASIC11.16□□□□□ -0.62
Sdc1P18828 AC123645.1-201ENSMUST00000228469 605 ntBASIC11.16□□□□□ -0.62
Sdc1P18828 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
Sdc1P18828 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC11.16□□□□□ -0.62
Sdc1P18828 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC11.16□□□□□ -0.62
Sdc1P18828 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC11.16□□□□□ -0.62
Sdc1P18828 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC11.16□□□□□ -0.62
Sdc1P18828 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC11.16□□□□□ -0.62
Sdc1P18828 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Sdc1P18828 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC11.16□□□□□ -0.62
Sdc1P18828 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC11.16□□□□□ -0.62
Sdc1P18828 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
Sdc1P18828 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC11.15□□□□□ -0.62
Sdc1P18828 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
Sdc1P18828 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
Sdc1P18828 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
Sdc1P18828 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
Sdc1P18828 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Gm12882-201ENSMUST00000121696 517 ntBASIC11.15□□□□□ -0.62
Sdc1P18828 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC11.15□□□□□ -0.62
Sdc1P18828 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC11.15□□□□□ -0.62
Sdc1P18828 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC11.15□□□□□ -0.62
Sdc1P18828 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC11.15□□□□□ -0.62
Sdc1P18828 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC11.15□□□□□ -0.62
Sdc1P18828 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC11.15□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 47.4 ms