Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx1P18111 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx1P18111 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx1P18111 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx1P18111 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx1P18111 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx1P18111 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx1P18111 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx1P18111 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx1P18111 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx1P18111 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx1P18111 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx1P18111 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx1P18111 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx1P18111 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC11.06□□□□□ -0.64
Cdx1P18111 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx1P18111 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx1P18111 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
Cdx1P18111 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC11.06□□□□□ -0.64
Cdx1P18111 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx1P18111 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC11.06□□□□□ -0.64
Cdx1P18111 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx1P18111 AC116503.1-201ENSMUST00000215445 2192 ntBASIC11.06□□□□□ -0.64
Cdx1P18111 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC11.06□□□□□ -0.64
Cdx1P18111 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx1P18111 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Cdx1P18111 Nrn1-204ENSMUST00000224323 1779 ntBASIC11.05□□□□□ -0.64
Cdx1P18111 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Gm14752-201ENSMUST00000120719 2075 ntBASIC11.05□□□□□ -0.64
Cdx1P18111 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC11.05□□□□□ -0.64
Cdx1P18111 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC11.05□□□□□ -0.64
Cdx1P18111 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Cdx1P18111 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Cdx1P18111 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC11.05□□□□□ -0.64
Cdx1P18111 Gm14722-201ENSMUST00000118943 689 ntBASIC11.05□□□□□ -0.64
Cdx1P18111 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC11.05□□□□□ -0.64
Cdx1P18111 Mir6956-201ENSMUST00000183598 62 ntBASIC11.05□□□□□ -0.64
Cdx1P18111 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Gm5312-201ENSMUST00000203728 547 ntBASIC11.05□□□□□ -0.64
Cdx1P18111 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Thap2-203ENSMUST00000218989 527 ntBASIC11.05□□□□□ -0.64
Cdx1P18111 AC158982.1-201ENSMUST00000228377 901 ntBASIC11.05□□□□□ -0.64
Cdx1P18111 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC11.05□□□□□ -0.64
Cdx1P18111 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Cdx1P18111 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC11.05□□□□□ -0.64
Cdx1P18111 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC11.05□□□□□ -0.64
Cdx1P18111 AC119177.1-201ENSMUST00000227647 1332 ntBASIC11.05□□□□□ -0.64
Cdx1P18111 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Cdx1P18111 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Cdx1P18111 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Cdx1P18111 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Cdx1P18111 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC11.04□□□□□ -0.64
Cdx1P18111 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC11.04□□□□□ -0.64
Cdx1P18111 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC11.04□□□□□ -0.64
Cdx1P18111 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC11.04□□□□□ -0.64
Cdx1P18111 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC11.04□□□□□ -0.64
Cdx1P18111 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Cdx1P18111 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC11.04□□□□□ -0.64
Cdx1P18111 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC11.04□□□□□ -0.64
Cdx1P18111 Gm45706-201ENSMUST00000213063 2136 ntBASIC11.04□□□□□ -0.64
Cdx1P18111 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC11.04□□□□□ -0.64
Cdx1P18111 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms