Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm18934-201ENSMUST00000216671 1044 ntBASIC14.8□□□□□ -0.04
RaraP11416 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC14.8□□□□□ -0.04
RaraP11416 Gm46209-201ENSMUST00000217912 553 ntBASIC14.8□□□□□ -0.04
RaraP11416 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC14.8□□□□□ -0.04
RaraP11416 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
RaraP11416 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
RaraP11416 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
RaraP11416 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC14.8□□□□□ -0.04
RaraP11416 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
RaraP11416 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
RaraP11416 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
RaraP11416 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC14.79□□□□□ -0.04
RaraP11416 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC14.79□□□□□ -0.04
RaraP11416 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
RaraP11416 Gm37277-201ENSMUST00000194052 1111 ntBASIC14.79□□□□□ -0.04
RaraP11416 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC14.79□□□□□ -0.04
RaraP11416 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Gm45638-201ENSMUST00000211507 2878 ntBASIC14.79□□□□□ -0.04
RaraP11416 Gm9229-201ENSMUST00000222777 126 ntBASIC14.79□□□□□ -0.04
RaraP11416 AC139350.1-201ENSMUST00000227064 1594 ntBASIC14.79□□□□□ -0.04
RaraP11416 Rbfox2-208ENSMUST00000227930 1218 ntBASIC14.79□□□□□ -0.04
RaraP11416 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC14.79□□□□□ -0.04
RaraP11416 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
RaraP11416 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC14.79□□□□□ -0.04
RaraP11416 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RaraP11416 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC14.79□□□□□ -0.04
RaraP11416 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
RaraP11416 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RaraP11416 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC14.78□□□□□ -0.04
RaraP11416 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC14.78□□□□□ -0.04
RaraP11416 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
RaraP11416 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
RaraP11416 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RaraP11416 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
RaraP11416 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RaraP11416 Gm13385-201ENSMUST00000121089 220 ntBASIC14.78□□□□□ -0.04
RaraP11416 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RaraP11416 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC14.78□□□□□ -0.04
RaraP11416 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC14.78□□□□□ -0.04
RaraP11416 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
RaraP11416 Gm6283-201ENSMUST00000182369 1000 ntBASIC14.78□□□□□ -0.04
RaraP11416 Gm38294-201ENSMUST00000192831 381 ntBASIC14.78□□□□□ -0.04
RaraP11416 Gm2213-201ENSMUST00000197485 688 ntBASIC14.78□□□□□ -0.04
RaraP11416 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
RaraP11416 Gm20632-201ENSMUST00000176760 2427 ntBASIC14.78□□□□□ -0.04
RaraP11416 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
RaraP11416 Gm44891-201ENSMUST00000208817 2223 ntBASIC14.78□□□□□ -0.04
RaraP11416 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RaraP11416 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
RaraP11416 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
RaraP11416 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RaraP11416 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
RaraP11416 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
RaraP11416 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
RaraP11416 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
RaraP11416 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
RaraP11416 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
RaraP11416 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
RaraP11416 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.04
RaraP11416 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
RaraP11416 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
RaraP11416 Gm8775-201ENSMUST00000170943 1327 ntBASIC14.77□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 60.7 ms