Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Gm14057-201ENSMUST00000120631 482 ntBASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Gm12151-201ENSMUST00000121374 290 ntBASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Gm27838-201ENSMUST00000184829 128 ntBASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Gm10576-201ENSMUST00000191927 825 ntBASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Gm20949-201ENSMUST00000206478 952 ntBASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 AC154621.1-201ENSMUST00000226155 1119 ntBASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC15.08■□□□□ 0
Prpf40aQ9R1C7 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Gm10766-202ENSMUST00000194123 606 ntBASIC15.07■□□□□ 0
Prpf40aQ9R1C7 CT030704.2-201ENSMUST00000228887 494 ntBASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC15.07■□□□□ 0
Prpf40aQ9R1C7 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Gm7390-201ENSMUST00000212452 1216 ntBASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC15.06■□□□□ 0
Prpf40aQ9R1C7 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
Prpf40aQ9R1C7 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Prpf40aQ9R1C7 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ 0
Prpf40aQ9R1C7 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
Prpf40aQ9R1C7 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC15.05■□□□□ 0
Prpf40aQ9R1C7 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
Prpf40aQ9R1C7 Il17rd-203ENSMUST00000225146 3366 ntBASIC15.05■□□□□ -0
Prpf40aQ9R1C7 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Prpf40aQ9R1C7 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC15.05■□□□□ -0
Prpf40aQ9R1C7 Gm3809-201ENSMUST00000180973 1006 ntBASIC15.05■□□□□ -0
Prpf40aQ9R1C7 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC15.05■□□□□ -0
Prpf40aQ9R1C7 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC15.05■□□□□ -0
Prpf40aQ9R1C7 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC15.05■□□□□ -0
Prpf40aQ9R1C7 Gm29741-201ENSMUST00000192667 421 ntBASIC15.05■□□□□ -0
Prpf40aQ9R1C7 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC15.05■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 47.5 ms