Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Trim54Q9ERP3 Gm42550-201ENSMUST00000201553 960 ntBASIC14.81□□□□□ -0.04
Trim54Q9ERP3 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC14.81□□□□□ -0.04
Trim54Q9ERP3 AC140451.2-201ENSMUST00000228030 664 ntBASIC14.81□□□□□ -0.04
Trim54Q9ERP3 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim54Q9ERP3 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Trim54Q9ERP3 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Trim54Q9ERP3 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim54Q9ERP3 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim54Q9ERP3 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC14.81□□□□□ -0.04
Trim54Q9ERP3 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Trim54Q9ERP3 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC14.81□□□□□ -0.04
Trim54Q9ERP3 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
Trim54Q9ERP3 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Trim54Q9ERP3 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Trim54Q9ERP3 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC14.81□□□□□ -0.04
Trim54Q9ERP3 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC14.81□□□□□ -0.04
Trim54Q9ERP3 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Trim54Q9ERP3 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Gm29649-201ENSMUST00000185649 419 ntBASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Gm45841-201ENSMUST00000207700 164 ntBASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Gm6007-201ENSMUST00000208170 823 ntBASIC14.8□□□□□ -0.04
Trim54Q9ERP3 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Gm5161-201ENSMUST00000075243 853 ntBASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Gm10012-201ENSMUST00000078252 192 ntBASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim54Q9ERP3 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Gm13612-201ENSMUST00000119276 390 ntBASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Gm27731-201ENSMUST00000185192 107 ntBASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Gm45784-201ENSMUST00000188360 142 ntBASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 AC122459.1-201ENSMUST00000228373 885 ntBASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim54Q9ERP3 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim54Q9ERP3 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC14.78□□□□□ -0.04
Trim54Q9ERP3 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
Trim54Q9ERP3 Ankra2-208ENSMUST00000226100 1476 ntBASIC14.78□□□□□ -0.04
Trim54Q9ERP3 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms