Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msh4Q99MT2 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msh4Q99MT2 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msh4Q99MT2 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC13.36□□□□□ -0.27
Msh4Q99MT2 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Msh4Q99MT2 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Msh4Q99MT2 Gm2423-201ENSMUST00000074863 733 ntBASIC13.36□□□□□ -0.27
Msh4Q99MT2 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msh4Q99MT2 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC13.36□□□□□ -0.27
Msh4Q99MT2 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msh4Q99MT2 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msh4Q99MT2 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msh4Q99MT2 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Msh4Q99MT2 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msh4Q99MT2 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msh4Q99MT2 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
Msh4Q99MT2 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msh4Q99MT2 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msh4Q99MT2 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Msh4Q99MT2 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Msh4Q99MT2 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msh4Q99MT2 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msh4Q99MT2 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msh4Q99MT2 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Msh4Q99MT2 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msh4Q99MT2 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Msh4Q99MT2 Gm24694-201ENSMUST00000180054 110 ntBASIC13.35□□□□□ -0.27
Msh4Q99MT2 Gm27663-201ENSMUST00000184839 110 ntBASIC13.35□□□□□ -0.27
Msh4Q99MT2 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC13.35□□□□□ -0.27
Msh4Q99MT2 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Msh4Q99MT2 Gm7730-201ENSMUST00000212486 454 ntBASIC13.35□□□□□ -0.27
Msh4Q99MT2 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msh4Q99MT2 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Msh4Q99MT2 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msh4Q99MT2 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msh4Q99MT2 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC13.35□□□□□ -0.27
Msh4Q99MT2 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msh4Q99MT2 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Msh4Q99MT2 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msh4Q99MT2 Gm12020-201ENSMUST00000119030 2042 ntBASIC13.35□□□□□ -0.27
Msh4Q99MT2 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Msh4Q99MT2 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msh4Q99MT2 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msh4Q99MT2 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Msh4Q99MT2 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Msh4Q99MT2 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Gm11405-201ENSMUST00000118689 1556 ntBASIC13.34□□□□□ -0.27
Msh4Q99MT2 Gm42928-201ENSMUST00000197338 3339 ntBASIC13.34□□□□□ -0.27
Msh4Q99MT2 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Gm29667-201ENSMUST00000190817 490 ntBASIC13.34□□□□□ -0.27
Msh4Q99MT2 Gm7390-201ENSMUST00000212452 1216 ntBASIC13.34□□□□□ -0.27
Msh4Q99MT2 AC124732.1-201ENSMUST00000221551 910 ntBASIC13.34□□□□□ -0.27
Msh4Q99MT2 Wdyhv1-206ENSMUST00000227142 786 ntBASIC13.34□□□□□ -0.27
Msh4Q99MT2 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Gm6263-201ENSMUST00000120029 1342 ntBASIC13.34□□□□□ -0.27
Msh4Q99MT2 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Msh4Q99MT2 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms