Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Cdk5rap3Q99LM2 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Cdk5rap3Q99LM2 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC14.21□□□□□ -0.13
Cdk5rap3Q99LM2 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cdk5rap3Q99LM2 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Cdk5rap3Q99LM2 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
Cdk5rap3Q99LM2 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Cdk5rap3Q99LM2 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cdk5rap3Q99LM2 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
Cdk5rap3Q99LM2 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
Cdk5rap3Q99LM2 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
Cdk5rap3Q99LM2 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC14.21□□□□□ -0.14
Cdk5rap3Q99LM2 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Cdk5rap3Q99LM2 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Gm12500-202ENSMUST00000186471 2428 ntBASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Gm24543-201ENSMUST00000103867 82 ntBASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 AC154806.6-201ENSMUST00000228192 202 ntBASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Gm37795-201ENSMUST00000194216 2459 ntBASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Gm28386-201ENSMUST00000189147 1849 ntBASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Cdk5rap3Q99LM2 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Gm33320-201ENSMUST00000192232 530 ntBASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Gm38094-201ENSMUST00000195864 2978 ntBASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 AC166997.1-201ENSMUST00000225122 572 ntBASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
Cdk5rap3Q99LM2 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cdk5rap3Q99LM2 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Cdk5rap3Q99LM2 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Cdk5rap3Q99LM2 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cdk5rap3Q99LM2 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Cdk5rap3Q99LM2 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cdk5rap3Q99LM2 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cdk5rap3Q99LM2 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Cdk5rap3Q99LM2 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 54.5 ms