Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Gm27772-201ENSMUST00000184900 187 ntBASIC16.53■□□□□ 0.24
Brf1Q8CFK2 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC16.52■□□□□ 0.24
Brf1Q8CFK2 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Brf1Q8CFK2 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Brf1Q8CFK2 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Brf1Q8CFK2 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Brf1Q8CFK2 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Brf1Q8CFK2 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Brf1Q8CFK2 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Brf1Q8CFK2 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Brf1Q8CFK2 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Brf1Q8CFK2 Gm14730-201ENSMUST00000122378 1045 ntBASIC16.52■□□□□ 0.24
Brf1Q8CFK2 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC16.52■□□□□ 0.24
Brf1Q8CFK2 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC16.52■□□□□ 0.24
Brf1Q8CFK2 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC16.52■□□□□ 0.24
Brf1Q8CFK2 Gm7498-201ENSMUST00000203282 1084 ntBASIC16.52■□□□□ 0.24
Brf1Q8CFK2 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC16.52■□□□□ 0.24
Brf1Q8CFK2 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Brf1Q8CFK2 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Brf1Q8CFK2 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Brf1Q8CFK2 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Brf1Q8CFK2 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Brf1Q8CFK2 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Brf1Q8CFK2 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Brf1Q8CFK2 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Brf1Q8CFK2 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
Brf1Q8CFK2 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Brf1Q8CFK2 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Brf1Q8CFK2 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Brf1Q8CFK2 Gm14752-201ENSMUST00000120719 2075 ntBASIC16.52■□□□□ 0.23
Brf1Q8CFK2 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Brf1Q8CFK2 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Brf1Q8CFK2 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Gm43094-201ENSMUST00000196549 921 ntBASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Brf1Q8CFK2 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Brf1Q8CFK2 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Brf1Q8CFK2 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Brf1Q8CFK2 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Brf1Q8CFK2 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Brf1Q8CFK2 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Brf1Q8CFK2 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Brf1Q8CFK2 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Brf1Q8CFK2 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Brf1Q8CFK2 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Brf1Q8CFK2 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Brf1Q8CFK2 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Brf1Q8CFK2 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC16.5■□□□□ 0.23
Brf1Q8CFK2 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Brf1Q8CFK2 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Brf1Q8CFK2 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC16.5■□□□□ 0.23
Brf1Q8CFK2 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Brf1Q8CFK2 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms