Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 Gm4984-201ENSMUST00000115987 360 ntBASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 Mir7654-201ENSMUST00000185082 70 ntBASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 AC155252.1-201ENSMUST00000226462 1208 ntBASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb4Q6P8W9 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Gm27892-201ENSMUST00000185017 106 ntBASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Gm5425-201ENSMUST00000214125 459 ntBASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 AC155258.1-201ENSMUST00000219303 253 ntBASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 AC155729.1-201ENSMUST00000227758 544 ntBASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb4Q6P8W9 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC14.33□□□□□ -0.11
Hmgb4Q6P8W9 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Hmgb4Q6P8W9 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC14.33□□□□□ -0.11
Hmgb4Q6P8W9 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Hmgb4Q6P8W9 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Hmgb4Q6P8W9 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb4Q6P8W9 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb4Q6P8W9 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb4Q6P8W9 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb4Q6P8W9 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb4Q6P8W9 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb4Q6P8W9 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb4Q6P8W9 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb4Q6P8W9 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC14.33□□□□□ -0.12
Hmgb4Q6P8W9 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
Hmgb4Q6P8W9 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb4Q6P8W9 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb4Q6P8W9 Gm5356-201ENSMUST00000093326 615 ntBASIC14.33□□□□□ -0.12
Hmgb4Q6P8W9 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Hmgb4Q6P8W9 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
Hmgb4Q6P8W9 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb4Q6P8W9 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb4Q6P8W9 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 707.6 ms