Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Klk2-ps-201ENSMUST00000205342 571 ntBASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Gm44608-201ENSMUST00000206827 855 ntBASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trim40Q3UWA4 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Trim40Q3UWA4 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Trim40Q3UWA4 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Trim40Q3UWA4 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 AC154222.1-201ENSMUST00000223882 475 ntBASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trim40Q3UWA4 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Gm10176-201ENSMUST00000159707 2264 ntBASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Gm15483-201ENSMUST00000120338 456 ntBASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Gm8775-201ENSMUST00000170943 1327 ntBASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trim40Q3UWA4 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 78 ms