Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Gm27430-201ENSMUST00000184585 107 ntBASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Gm44333-201ENSMUST00000197168 107 ntBASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Gm44608-201ENSMUST00000206827 855 ntBASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm7899-201ENSMUST00000192935 1897 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm22065-201ENSMUST00000103753 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm22066-201ENSMUST00000103761 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm24932-201ENSMUST00000103763 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm24115-201ENSMUST00000103799 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm22190-201ENSMUST00000103827 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm22191-201ENSMUST00000103831 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm24721-201ENSMUST00000103849 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm28018-201ENSMUST00000103869 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm26399-201ENSMUST00000103937 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm25349-201ENSMUST00000177728 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm23616-201ENSMUST00000177797 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm25871-201ENSMUST00000177816 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm24752-201ENSMUST00000178240 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm24496-201ENSMUST00000178287 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm25649-201ENSMUST00000178476 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm25548-201ENSMUST00000178681 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm23147-201ENSMUST00000178841 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm26095-201ENSMUST00000179270 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm22171-201ENSMUST00000179283 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm23936-201ENSMUST00000179354 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm22619-201ENSMUST00000179516 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm25255-201ENSMUST00000179579 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm24755-201ENSMUST00000179691 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm26506-201ENSMUST00000179692 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm25086-201ENSMUST00000179931 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm23243-201ENSMUST00000180047 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm24659-201ENSMUST00000180212 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm24169-201ENSMUST00000180244 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm23689-201ENSMUST00000180354 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm5745-201ENSMUST00000183748 313 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm27359-201ENSMUST00000184153 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm27785-201ENSMUST00000184268 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm27466-201ENSMUST00000184396 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm27703-201ENSMUST00000184836 110 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm10253-201ENSMUST00000194270 940 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Klk2-ps-201ENSMUST00000205342 571 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Gm18057-201ENSMUST00000208220 503 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 AC126408.1-201ENSMUST00000225184 523 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 AC154767.3-201ENSMUST00000225150 1342 ntBASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col28a1Q2UY11 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms