Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col17a1Q07563 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col17a1Q07563 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Col17a1Q07563 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col17a1Q07563 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC20.54■□□□□ 0.88
Col17a1Q07563 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Col17a1Q07563 Gm14274-201ENSMUST00000117182 615 ntBASIC20.54■□□□□ 0.88
Col17a1Q07563 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Col17a1Q07563 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC20.54■□□□□ 0.88
Col17a1Q07563 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col17a1Q07563 1700088E04Rik-203ENSMUST00000186053 535 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Col17a1Q07563 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Col17a1Q07563 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Col17a1Q07563 Mir219a-1-201ENSMUST00000083621 110 ntBASIC20.54■□□□□ 0.88
Col17a1Q07563 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col17a1Q07563 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col17a1Q07563 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Col17a1Q07563 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Col17a1Q07563 Gm16011-201ENSMUST00000121567 2662 ntBASIC20.53■□□□□ 0.88
Col17a1Q07563 Slc10a1-203ENSMUST00000218342 1411 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col17a1Q07563 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col17a1Q07563 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC20.53■□□□□ 0.88
Col17a1Q07563 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Col17a1Q07563 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col17a1Q07563 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC20.53■□□□□ 0.88
Col17a1Q07563 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Col17a1Q07563 Cenpx-203ENSMUST00000106154 873 ntTSL 2 BASIC20.53■□□□□ 0.88
Col17a1Q07563 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Col17a1Q07563 Gm12990-201ENSMUST00000120372 468 ntBASIC20.53■□□□□ 0.88
Col17a1Q07563 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Col17a1Q07563 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC20.53■□□□□ 0.88
Col17a1Q07563 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Col17a1Q07563 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Col17a1Q07563 Ighv1-86-201ENSMUST00000200562 353 ntBASIC20.53■□□□□ 0.88
Col17a1Q07563 Gm19187-201ENSMUST00000206781 892 ntBASIC20.53■□□□□ 0.88
Col17a1Q07563 Gm2517-201ENSMUST00000215651 348 ntBASIC20.53■□□□□ 0.88
Col17a1Q07563 AC166341.2-201ENSMUST00000220571 120 ntBASIC20.53■□□□□ 0.88
Col17a1Q07563 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Col17a1Q07563 Gm22058-201ENSMUST00000083393 310 ntBASIC20.53■□□□□ 0.88
Col17a1Q07563 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC20.53■□□□□ 0.88
Col17a1Q07563 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col17a1Q07563 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Col17a1Q07563 Gm21998-201ENSMUST00000117552 1308 ntBASIC20.53■□□□□ 0.88
Col17a1Q07563 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Col17a1Q07563 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col17a1Q07563 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col17a1Q07563 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col17a1Q07563 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col17a1Q07563 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col17a1Q07563 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Col17a1Q07563 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Col17a1Q07563 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Col17a1Q07563 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Col17a1Q07563 Atp6v1g2-202ENSMUST00000118384 483 ntTSL 2 BASIC20.52■□□□□ 0.88
Col17a1Q07563 Gm11978-201ENSMUST00000122315 466 ntBASIC20.52■□□□□ 0.88
Col17a1Q07563 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC20.52■□□□□ 0.88
Col17a1Q07563 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
Col17a1Q07563 Gm37246-201ENSMUST00000192665 835 ntBASIC20.52■□□□□ 0.88
Col17a1Q07563 AC171241.1-201ENSMUST00000228144 1166 ntBASIC20.52■□□□□ 0.88
Col17a1Q07563 Scg5-201ENSMUST00000024005 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col17a1Q07563 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Col17a1Q07563 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC20.52■□□□□ 0.88
Col17a1Q07563 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col17a1Q07563 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col17a1Q07563 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col17a1Q07563 Gm5909-201ENSMUST00000119768 1281 ntBASIC20.51■□□□□ 0.87
Col17a1Q07563 Gm14219-201ENSMUST00000120414 288 ntBASIC20.51■□□□□ 0.87
Col17a1Q07563 Gm5257-201ENSMUST00000121823 790 ntBASIC20.51■□□□□ 0.87
Col17a1Q07563 AC034099.1-202ENSMUST00000133843 833 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Col17a1Q07563 Gm18463-201ENSMUST00000207258 474 ntBASIC20.51■□□□□ 0.87
Col17a1Q07563 Rps2-ps12-201ENSMUST00000214262 785 ntBASIC20.51■□□□□ 0.87
Col17a1Q07563 AC164087.2-201ENSMUST00000216206 1072 ntBASIC20.51■□□□□ 0.87
Col17a1Q07563 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Col17a1Q07563 Gm21811-201ENSMUST00000096485 930 ntBASIC20.51■□□□□ 0.87
Col17a1Q07563 Cfap161-201ENSMUST00000011298 1335 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col17a1Q07563 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC20.51■□□□□ 0.87
Col17a1Q07563 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col17a1Q07563 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Col17a1Q07563 2610301B20Rik-202ENSMUST00000101504 2053 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Col17a1Q07563 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col17a1Q07563 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col17a1Q07563 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col17a1Q07563 1700001C02Rik-202ENSMUST00000114743 729 ntTSL 5 BASIC20.5■□□□□ 0.87
Col17a1Q07563 Gm15573-201ENSMUST00000119487 540 ntBASIC20.5■□□□□ 0.87
Col17a1Q07563 Gm12943-201ENSMUST00000119616 210 ntBASIC20.5■□□□□ 0.87
Col17a1Q07563 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC20.5■□□□□ 0.87
Col17a1Q07563 Ighv2-1-201ENSMUST00000170946 353 ntBASIC20.5■□□□□ 0.87
Col17a1Q07563 H2-Q3-201ENSMUST00000172583 608 ntBASIC20.5■□□□□ 0.87
Col17a1Q07563 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC20.5■□□□□ 0.87
Col17a1Q07563 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC20.5■□□□□ 0.87
Col17a1Q07563 Gm14005-208ENSMUST00000223654 681 ntBASIC20.5■□□□□ 0.87
Col17a1Q07563 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col17a1Q07563 Oprm1-211ENSMUST00000105602 1366 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col17a1Q07563 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col17a1Q07563 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col17a1Q07563 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col17a1Q07563 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Col17a1Q07563 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col17a1Q07563 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col17a1Q07563 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms