Protein–RNA interactions for Protein: P54276

Msh6, DNA mismatch repair protein Msh6, mousemouse

Known RBP Predictions only

Length 1,358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh6P54276 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Msh6P54276 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Msh6P54276 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Msh6P54276 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Msh6P54276 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Msh6P54276 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC17.23■□□□□ 0.35
Msh6P54276 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Msh6P54276 Gm2824-203ENSMUST00000226189 1228 ntBASIC17.23■□□□□ 0.35
Msh6P54276 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC17.23■□□□□ 0.35
Msh6P54276 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC17.23■□□□□ 0.35
Msh6P54276 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC17.23■□□□□ 0.35
Msh6P54276 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Msh6P54276 Gm8706-201ENSMUST00000197372 1491 ntBASIC17.23■□□□□ 0.35
Msh6P54276 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msh6P54276 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msh6P54276 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msh6P54276 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msh6P54276 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
Msh6P54276 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msh6P54276 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Msh6P54276 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Msh6P54276 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msh6P54276 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC17.22■□□□□ 0.35
Msh6P54276 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Msh6P54276 Gm5850-201ENSMUST00000192923 1206 ntBASIC17.22■□□□□ 0.35
Msh6P54276 Gm37259-201ENSMUST00000193903 849 ntBASIC17.22■□□□□ 0.35
Msh6P54276 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC17.22■□□□□ 0.35
Msh6P54276 Olfr284-202ENSMUST00000206647 966 ntBASIC17.22■□□□□ 0.35
Msh6P54276 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC17.22■□□□□ 0.35
Msh6P54276 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msh6P54276 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msh6P54276 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msh6P54276 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msh6P54276 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Msh6P54276 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msh6P54276 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Msh6P54276 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
Msh6P54276 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Msh6P54276 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Msh6P54276 Gm38197-201ENSMUST00000192320 2122 ntBASIC17.21■□□□□ 0.35
Msh6P54276 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Msh6P54276 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Msh6P54276 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Msh6P54276 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Msh6P54276 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Msh6P54276 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC17.21■□□□□ 0.35
Msh6P54276 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Msh6P54276 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Msh6P54276 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
Msh6P54276 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC17.21■□□□□ 0.35
Msh6P54276 Gm38341-201ENSMUST00000195357 515 ntBASIC17.21■□□□□ 0.35
Msh6P54276 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC17.21■□□□□ 0.35
Msh6P54276 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Msh6P54276 Gm10268-201ENSMUST00000085340 555 ntBASIC17.21■□□□□ 0.35
Msh6P54276 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Msh6P54276 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Msh6P54276 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Msh6P54276 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Msh6P54276 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Msh6P54276 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Msh6P54276 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Msh6P54276 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Msh6P54276 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Msh6P54276 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Msh6P54276 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Msh6P54276 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Msh6P54276 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Msh6P54276 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Msh6P54276 Rn7s1-201ENSMUST00000174924 300 ntBASIC17.2■□□□□ 0.34
Msh6P54276 Rn7s2-201ENSMUST00000175032 300 ntBASIC17.2■□□□□ 0.34
Msh6P54276 Gm26461-201ENSMUST00000175064 290 ntBASIC17.2■□□□□ 0.34
Msh6P54276 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Msh6P54276 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC17.2■□□□□ 0.34
Msh6P54276 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Msh6P54276 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Msh6P54276 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC17.2■□□□□ 0.34
Msh6P54276 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Msh6P54276 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Msh6P54276 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC17.2■□□□□ 0.34
Msh6P54276 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Msh6P54276 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msh6P54276 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msh6P54276 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msh6P54276 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msh6P54276 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Msh6P54276 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msh6P54276 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC17.19■□□□□ 0.34
Msh6P54276 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC17.19■□□□□ 0.34
Msh6P54276 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msh6P54276 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Msh6P54276 Rn7sk-201ENSMUST00000083103 331 ntBASIC17.19■□□□□ 0.34
Msh6P54276 Gm26315-201ENSMUST00000083890 321 ntBASIC17.19■□□□□ 0.34
Msh6P54276 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msh6P54276 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msh6P54276 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msh6P54276 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msh6P54276 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Msh6P54276 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Msh6P54276 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Msh6P54276 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms