Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Lmx1bO88609 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC12.42□□□□□ -0.42
Lmx1bO88609 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC12.42□□□□□ -0.42
Lmx1bO88609 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Gm11557-201ENSMUST00000120200 1008 ntBASIC12.42□□□□□ -0.42
Lmx1bO88609 Gm13385-201ENSMUST00000121089 220 ntBASIC12.42□□□□□ -0.42
Lmx1bO88609 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC12.42□□□□□ -0.42
Lmx1bO88609 Gm8927-201ENSMUST00000181978 981 ntBASIC12.42□□□□□ -0.42
Lmx1bO88609 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC12.42□□□□□ -0.42
Lmx1bO88609 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Gm18905-201ENSMUST00000205454 928 ntBASIC12.42□□□□□ -0.42
Lmx1bO88609 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC12.42□□□□□ -0.42
Lmx1bO88609 Gm5425-201ENSMUST00000214125 459 ntBASIC12.42□□□□□ -0.42
Lmx1bO88609 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 AC156560.2-201ENSMUST00000221232 264 ntBASIC12.42□□□□□ -0.42
Lmx1bO88609 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Gm3222-201ENSMUST00000071282 990 ntBASIC12.42□□□□□ -0.42
Lmx1bO88609 Mir497b-201ENSMUST00000093601 125 ntBASIC12.42□□□□□ -0.42
Lmx1bO88609 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Lmx1bO88609 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Lmx1bO88609 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC12.42□□□□□ -0.42
Lmx1bO88609 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC12.41□□□□□ -0.42
Lmx1bO88609 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC12.41□□□□□ -0.42
Lmx1bO88609 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC12.41□□□□□ -0.42
Lmx1bO88609 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC12.41□□□□□ -0.42
Lmx1bO88609 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Lmx1bO88609 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Lmx1bO88609 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Gm12960-201ENSMUST00000120017 1066 ntBASIC12.41□□□□□ -0.42
Lmx1bO88609 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Gm28911-201ENSMUST00000188837 117 ntBASIC12.41□□□□□ -0.42
Lmx1bO88609 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Lmx1bO88609 Gm18307-201ENSMUST00000206864 949 ntBASIC12.41□□□□□ -0.42
Lmx1bO88609 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC12.41□□□□□ -0.42
Lmx1bO88609 Gm7446-201ENSMUST00000221035 1240 ntBASIC12.41□□□□□ -0.42
Lmx1bO88609 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC12.41□□□□□ -0.42
Lmx1bO88609 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lmx1bO88609 Gm38037-201ENSMUST00000192600 1624 ntBASIC12.4□□□□□ -0.42
Lmx1bO88609 Gm9347-201ENSMUST00000211473 1607 ntBASIC12.4□□□□□ -0.42
Lmx1bO88609 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC12.4□□□□□ -0.42
Lmx1bO88609 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC12.4□□□□□ -0.42
Lmx1bO88609 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC12.4□□□□□ -0.42
Lmx1bO88609 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 65.1 ms