Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
Smc1aQ9CU62 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC23.92■■□□□ 1.42
Smc1aQ9CU62 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Smc1aQ9CU62 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Smc1aQ9CU62 Gm5522-201ENSMUST00000189483 1242 ntBASIC23.91■■□□□ 1.42
Smc1aQ9CU62 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC23.91■■□□□ 1.42
Smc1aQ9CU62 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Smc1aQ9CU62 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Smc1aQ9CU62 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
Smc1aQ9CU62 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC23.91■■□□□ 1.42
Smc1aQ9CU62 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Smc1aQ9CU62 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Smc1aQ9CU62 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC23.9■■□□□ 1.42
Smc1aQ9CU62 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC23.9■■□□□ 1.42
Smc1aQ9CU62 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Smc1aQ9CU62 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC23.89■■□□□ 1.42
Smc1aQ9CU62 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Smc1aQ9CU62 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Smc1aQ9CU62 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Smc1aQ9CU62 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.41
Smc1aQ9CU62 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Smc1aQ9CU62 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
Smc1aQ9CU62 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
Smc1aQ9CU62 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
Smc1aQ9CU62 Gm26766-202ENSMUST00000227544 2347 ntBASIC23.88■■□□□ 1.41
Smc1aQ9CU62 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
Smc1aQ9CU62 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
Smc1aQ9CU62 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Smc1aQ9CU62 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Smc1aQ9CU62 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Smc1aQ9CU62 Gm4419-202ENSMUST00000226239 1431 ntBASIC23.86■■□□□ 1.41
Smc1aQ9CU62 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Smc1aQ9CU62 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Smc1aQ9CU62 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Smc1aQ9CU62 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC23.86■■□□□ 1.41
Smc1aQ9CU62 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
Smc1aQ9CU62 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Smc1aQ9CU62 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC23.85■■□□□ 1.41
Smc1aQ9CU62 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
Smc1aQ9CU62 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Smc1aQ9CU62 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Smc1aQ9CU62 Gm6934-201ENSMUST00000194780 1905 ntBASIC23.84■■□□□ 1.41
Smc1aQ9CU62 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Smc1aQ9CU62 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC23.84■■□□□ 1.41
Smc1aQ9CU62 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Smc1aQ9CU62 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Smc1aQ9CU62 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Smc1aQ9CU62 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
Smc1aQ9CU62 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Smc1aQ9CU62 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Smc1aQ9CU62 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Smc1aQ9CU62 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
Smc1aQ9CU62 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC23.83■■□□□ 1.41
Smc1aQ9CU62 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC23.83■■□□□ 1.41
Smc1aQ9CU62 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
Smc1aQ9CU62 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC23.83■■□□□ 1.41
Smc1aQ9CU62 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Smc1aQ9CU62 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
Smc1aQ9CU62 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
Smc1aQ9CU62 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Smc1aQ9CU62 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
Smc1aQ9CU62 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC23.82■■□□□ 1.4
Smc1aQ9CU62 Gm15039-201ENSMUST00000118914 875 ntBASIC23.82■■□□□ 1.4
Smc1aQ9CU62 Gm43592-201ENSMUST00000196922 1165 ntBASIC23.82■■□□□ 1.4
Smc1aQ9CU62 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Smc1aQ9CU62 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Smc1aQ9CU62 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Smc1aQ9CU62 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Smc1aQ9CU62 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Smc1aQ9CU62 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
Smc1aQ9CU62 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC23.81■■□□□ 1.4
Smc1aQ9CU62 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
Smc1aQ9CU62 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC23.81■■□□□ 1.4
Smc1aQ9CU62 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Smc1aQ9CU62 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Smc1aQ9CU62 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Smc1aQ9CU62 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Smc1aQ9CU62 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Smc1aQ9CU62 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Smc1aQ9CU62 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Smc1aQ9CU62 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Smc1aQ9CU62 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
Smc1aQ9CU62 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Smc1aQ9CU62 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC23.79■■□□□ 1.4
Smc1aQ9CU62 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC23.79■■□□□ 1.4
Smc1aQ9CU62 Nsd1-203ENSMUST00000224156 1149 ntBASIC23.79■■□□□ 1.4
Smc1aQ9CU62 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Smc1aQ9CU62 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
Smc1aQ9CU62 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Smc1aQ9CU62 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
Smc1aQ9CU62 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC23.78■■□□□ 1.4
Smc1aQ9CU62 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC23.78■■□□□ 1.4
Smc1aQ9CU62 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC23.78■■□□□ 1.4
Smc1aQ9CU62 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Smc1aQ9CU62 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC23.78■■□□□ 1.4
Smc1aQ9CU62 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
Smc1aQ9CU62 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Smc1aQ9CU62 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC23.77■■□□□ 1.4
Smc1aQ9CU62 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
Smc1aQ9CU62 Gm43566-201ENSMUST00000196851 808 ntBASIC23.77■■□□□ 1.4
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms