Protein–RNA interactions for Protein: Q99JW4

Lims1, LIM and senescent cell antigen-like-containing domain protein 1, mousemouse

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lims1Q99JW4 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lims1Q99JW4 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lims1Q99JW4 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lims1Q99JW4 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Lims1Q99JW4 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lims1Q99JW4 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lims1Q99JW4 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Lims1Q99JW4 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Lims1Q99JW4 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lims1Q99JW4 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lims1Q99JW4 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Lims1Q99JW4 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
Lims1Q99JW4 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC19.77■□□□□ 0.76
Lims1Q99JW4 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
Lims1Q99JW4 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Lims1Q99JW4 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.75
Lims1Q99JW4 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Lims1Q99JW4 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Lims1Q99JW4 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Lims1Q99JW4 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lims1Q99JW4 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lims1Q99JW4 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lims1Q99JW4 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC19.76■□□□□ 0.75
Lims1Q99JW4 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lims1Q99JW4 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Lims1Q99JW4 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Lims1Q99JW4 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC19.75■□□□□ 0.75
Lims1Q99JW4 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Lims1Q99JW4 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lims1Q99JW4 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lims1Q99JW4 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lims1Q99JW4 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lims1Q99JW4 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lims1Q99JW4 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Lims1Q99JW4 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC19.73■□□□□ 0.75
Lims1Q99JW4 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC19.73■□□□□ 0.75
Lims1Q99JW4 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC19.73■□□□□ 0.75
Lims1Q99JW4 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lims1Q99JW4 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lims1Q99JW4 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lims1Q99JW4 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lims1Q99JW4 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lims1Q99JW4 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lims1Q99JW4 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lims1Q99JW4 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lims1Q99JW4 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lims1Q99JW4 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC19.71■□□□□ 0.75
Lims1Q99JW4 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lims1Q99JW4 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Lims1Q99JW4 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Lims1Q99JW4 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC19.71■□□□□ 0.75
Lims1Q99JW4 Gm20634-201ENSMUST00000090779 2956 ntBASIC19.71■□□□□ 0.75
Lims1Q99JW4 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lims1Q99JW4 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC19.71■□□□□ 0.75
Lims1Q99JW4 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lims1Q99JW4 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lims1Q99JW4 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC19.7■□□□□ 0.74
Lims1Q99JW4 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC19.7■□□□□ 0.74
Lims1Q99JW4 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lims1Q99JW4 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lims1Q99JW4 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lims1Q99JW4 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Lims1Q99JW4 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lims1Q99JW4 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Lims1Q99JW4 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
Lims1Q99JW4 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lims1Q99JW4 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Lims1Q99JW4 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lims1Q99JW4 Gm44428-201ENSMUST00000204474 874 ntBASIC19.69■□□□□ 0.74
Lims1Q99JW4 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Lims1Q99JW4 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lims1Q99JW4 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lims1Q99JW4 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lims1Q99JW4 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lims1Q99JW4 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC19.68■□□□□ 0.74
Lims1Q99JW4 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Lims1Q99JW4 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lims1Q99JW4 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC19.68■□□□□ 0.74
Lims1Q99JW4 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lims1Q99JW4 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lims1Q99JW4 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lims1Q99JW4 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC19.68■□□□□ 0.74
Lims1Q99JW4 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lims1Q99JW4 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Lims1Q99JW4 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lims1Q99JW4 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Lims1Q99JW4 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lims1Q99JW4 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
Lims1Q99JW4 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC19.66■□□□□ 0.74
Lims1Q99JW4 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lims1Q99JW4 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lims1Q99JW4 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lims1Q99JW4 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC19.66■□□□□ 0.74
Lims1Q99JW4 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lims1Q99JW4 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lims1Q99JW4 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Lims1Q99JW4 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Lims1Q99JW4 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
Lims1Q99JW4 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lims1Q99JW4 Gm6311-201ENSMUST00000073790 878 ntBASIC19.65■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 78.4 ms