Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC26.98■■□□□ 1.91
Ddx58Q6Q899 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC26.98■■□□□ 1.91
Ddx58Q6Q899 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC26.98■■□□□ 1.91
Ddx58Q6Q899 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC26.98■■□□□ 1.91
Ddx58Q6Q899 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC26.98■■□□□ 1.91
Ddx58Q6Q899 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC26.98■■□□□ 1.91
Ddx58Q6Q899 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Ddx58Q6Q899 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
Ddx58Q6Q899 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Ddx58Q6Q899 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Ddx58Q6Q899 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC26.97■■□□□ 1.91
Ddx58Q6Q899 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Ddx58Q6Q899 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Ddx58Q6Q899 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
Ddx58Q6Q899 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
Ddx58Q6Q899 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
Ddx58Q6Q899 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC26.96■■□□□ 1.91
Ddx58Q6Q899 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
Ddx58Q6Q899 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
Ddx58Q6Q899 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
Ddx58Q6Q899 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
Ddx58Q6Q899 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
Ddx58Q6Q899 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC26.95■■□□□ 1.91
Ddx58Q6Q899 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
Ddx58Q6Q899 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
Ddx58Q6Q899 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
Ddx58Q6Q899 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC26.94■■□□□ 1.9
Ddx58Q6Q899 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Ddx58Q6Q899 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
Ddx58Q6Q899 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC26.94■■□□□ 1.9
Ddx58Q6Q899 Gm11847-201ENSMUST00000125165 1119 ntBASIC26.93■■□□□ 1.9
Ddx58Q6Q899 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC26.93■■□□□ 1.9
Ddx58Q6Q899 Gm5131-201ENSMUST00000212776 1238 ntBASIC26.93■■□□□ 1.9
Ddx58Q6Q899 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC26.93■■□□□ 1.9
Ddx58Q6Q899 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Ddx58Q6Q899 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Ddx58Q6Q899 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC26.92■■□□□ 1.9
Ddx58Q6Q899 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC26.92■■□□□ 1.9
Ddx58Q6Q899 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Ddx58Q6Q899 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Ddx58Q6Q899 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC26.91■■□□□ 1.9
Ddx58Q6Q899 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC26.91■■□□□ 1.9
Ddx58Q6Q899 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Ddx58Q6Q899 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC26.91■■□□□ 1.9
Ddx58Q6Q899 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Ddx58Q6Q899 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
Ddx58Q6Q899 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC26.9■■□□□ 1.9
Ddx58Q6Q899 Etf1-202ENSMUST00000180351 108 ntBASIC26.9■■□□□ 1.9
Ddx58Q6Q899 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC26.9■■□□□ 1.9
Ddx58Q6Q899 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Ddx58Q6Q899 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC26.89■■□□□ 1.9
Ddx58Q6Q899 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Ddx58Q6Q899 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC26.89■■□□□ 1.9
Ddx58Q6Q899 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC26.89■■□□□ 1.9
Ddx58Q6Q899 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC26.89■■□□□ 1.9
Ddx58Q6Q899 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
Ddx58Q6Q899 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
Ddx58Q6Q899 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC26.88■■□□□ 1.89
Ddx58Q6Q899 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
Ddx58Q6Q899 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Ddx58Q6Q899 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Ddx58Q6Q899 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC26.87■■□□□ 1.89
Ddx58Q6Q899 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC26.87■■□□□ 1.89
Ddx58Q6Q899 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Ddx58Q6Q899 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
Ddx58Q6Q899 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC26.86■■□□□ 1.89
Ddx58Q6Q899 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Ddx58Q6Q899 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Ddx58Q6Q899 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
Ddx58Q6Q899 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
Ddx58Q6Q899 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
Ddx58Q6Q899 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC26.86■■□□□ 1.89
Ddx58Q6Q899 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Ddx58Q6Q899 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Ddx58Q6Q899 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Ddx58Q6Q899 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC26.85■■□□□ 1.89
Ddx58Q6Q899 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Ddx58Q6Q899 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC26.85■■□□□ 1.89
Ddx58Q6Q899 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC26.84■■□□□ 1.89
Ddx58Q6Q899 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC26.84■■□□□ 1.89
Ddx58Q6Q899 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC26.84■■□□□ 1.89
Ddx58Q6Q899 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
Ddx58Q6Q899 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Ddx58Q6Q899 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC26.84■■□□□ 1.89
Ddx58Q6Q899 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC26.84■■□□□ 1.89
Ddx58Q6Q899 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
Ddx58Q6Q899 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC26.83■■□□□ 1.89
Ddx58Q6Q899 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC26.83■■□□□ 1.89
Ddx58Q6Q899 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
Ddx58Q6Q899 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Ddx58Q6Q899 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Ddx58Q6Q899 Gm8093-201ENSMUST00000128935 1892 ntBASIC26.83■■□□□ 1.88
Ddx58Q6Q899 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Ddx58Q6Q899 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC26.82■■□□□ 1.88
Ddx58Q6Q899 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Ddx58Q6Q899 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Ddx58Q6Q899 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Ddx58Q6Q899 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC26.81■■□□□ 1.88
Ddx58Q6Q899 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Ddx58Q6Q899 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC26.81■■□□□ 1.88
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms