Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Cdx1P18111 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Cdx1P18111 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdx1P18111 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdx1P18111 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdx1P18111 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdx1P18111 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Cdx1P18111 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdx1P18111 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdx1P18111 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdx1P18111 Gm30023-201ENSMUST00000197970 889 ntBASIC17.23■□□□□ 0.35
Cdx1P18111 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdx1P18111 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cdx1P18111 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
Cdx1P18111 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdx1P18111 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
Cdx1P18111 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdx1P18111 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdx1P18111 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Cdx1P18111 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdx1P18111 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Cdx1P18111 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdx1P18111 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdx1P18111 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
Cdx1P18111 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdx1P18111 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdx1P18111 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdx1P18111 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdx1P18111 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Cdx1P18111 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdx1P18111 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdx1P18111 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Cdx1P18111 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Cdx1P18111 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdx1P18111 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdx1P18111 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdx1P18111 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Cdx1P18111 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdx1P18111 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdx1P18111 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdx1P18111 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdx1P18111 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC17.2■□□□□ 0.34
Cdx1P18111 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdx1P18111 AC153524.1-201ENSMUST00000220436 1935 ntBASIC17.19■□□□□ 0.34
Cdx1P18111 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cdx1P18111 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Cdx1P18111 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Cdx1P18111 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cdx1P18111 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cdx1P18111 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cdx1P18111 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cdx1P18111 Gm12504-201ENSMUST00000120860 2231 ntBASIC17.19■□□□□ 0.34
Cdx1P18111 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdx1P18111 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdx1P18111 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Cdx1P18111 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cdx1P18111 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
Cdx1P18111 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Cdx1P18111 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Cdx1P18111 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC17.17■□□□□ 0.34
Cdx1P18111 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdx1P18111 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Cdx1P18111 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdx1P18111 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdx1P18111 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Cdx1P18111 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Cdx1P18111 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cdx1P18111 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Cdx1P18111 Cap2-205ENSMUST00000225824 1634 ntBASIC17.15■□□□□ 0.34
Cdx1P18111 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC17.15■□□□□ 0.34
Cdx1P18111 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC17.15■□□□□ 0.34
Cdx1P18111 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cdx1P18111 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Cdx1P18111 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC17.14■□□□□ 0.33
Cdx1P18111 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cdx1P18111 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cdx1P18111 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cdx1P18111 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cdx1P18111 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Cdx1P18111 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cdx1P18111 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cdx1P18111 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Cdx1P18111 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cdx1P18111 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cdx1P18111 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Cdx1P18111 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC17.13■□□□□ 0.33
Cdx1P18111 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Cdx1P18111 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cdx1P18111 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cdx1P18111 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Cdx1P18111 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cdx1P18111 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cdx1P18111 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cdx1P18111 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cdx1P18111 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cdx1P18111 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cdx1P18111 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cdx1P18111 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cdx1P18111 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cdx1P18111 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms