Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Chmp6P0C0A3 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC23.39■■□□□ 1.33
Chmp6P0C0A3 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Chmp6P0C0A3 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Chmp6P0C0A3 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Chmp6P0C0A3 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Chmp6P0C0A3 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
Chmp6P0C0A3 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Chmp6P0C0A3 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
Chmp6P0C0A3 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
Chmp6P0C0A3 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC23.37■■□□□ 1.33
Chmp6P0C0A3 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Chmp6P0C0A3 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC23.37■■□□□ 1.33
Chmp6P0C0A3 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
Chmp6P0C0A3 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Chmp6P0C0A3 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Chmp6P0C0A3 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC23.36■■□□□ 1.33
Chmp6P0C0A3 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
Chmp6P0C0A3 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Chmp6P0C0A3 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC23.35■■□□□ 1.33
Chmp6P0C0A3 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Chmp6P0C0A3 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Chmp6P0C0A3 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Chmp6P0C0A3 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Chmp6P0C0A3 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Chmp6P0C0A3 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Chmp6P0C0A3 Gm43592-201ENSMUST00000196922 1165 ntBASIC23.34■■□□□ 1.33
Chmp6P0C0A3 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC23.34■■□□□ 1.33
Chmp6P0C0A3 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Chmp6P0C0A3 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Chmp6P0C0A3 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC23.34■■□□□ 1.33
Chmp6P0C0A3 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Chmp6P0C0A3 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Chmp6P0C0A3 Gm20634-201ENSMUST00000090779 2956 ntBASIC23.34■■□□□ 1.33
Chmp6P0C0A3 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Chmp6P0C0A3 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Chmp6P0C0A3 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC23.33■■□□□ 1.33
Chmp6P0C0A3 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC23.33■■□□□ 1.33
Chmp6P0C0A3 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Chmp6P0C0A3 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
Chmp6P0C0A3 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC23.33■■□□□ 1.32
Chmp6P0C0A3 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Chmp6P0C0A3 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Chmp6P0C0A3 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Chmp6P0C0A3 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Chmp6P0C0A3 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Chmp6P0C0A3 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Chmp6P0C0A3 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Chmp6P0C0A3 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Chmp6P0C0A3 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
Chmp6P0C0A3 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC23.31■■□□□ 1.32
Chmp6P0C0A3 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Chmp6P0C0A3 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC23.3■■□□□ 1.32
Chmp6P0C0A3 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC23.3■■□□□ 1.32
Chmp6P0C0A3 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
Chmp6P0C0A3 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Chmp6P0C0A3 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
Chmp6P0C0A3 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Chmp6P0C0A3 Gm28731-201ENSMUST00000185564 1569 ntBASIC23.29■■□□□ 1.32
Chmp6P0C0A3 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Chmp6P0C0A3 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Chmp6P0C0A3 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Chmp6P0C0A3 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Chmp6P0C0A3 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Chmp6P0C0A3 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
Chmp6P0C0A3 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC23.27■■□□□ 1.32
Chmp6P0C0A3 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Chmp6P0C0A3 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Chmp6P0C0A3 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
Chmp6P0C0A3 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Chmp6P0C0A3 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Chmp6P0C0A3 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Chmp6P0C0A3 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC23.27■■□□□ 1.31
Chmp6P0C0A3 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
Chmp6P0C0A3 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Chmp6P0C0A3 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Chmp6P0C0A3 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Chmp6P0C0A3 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Chmp6P0C0A3 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Chmp6P0C0A3 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC23.26■■□□□ 1.31
Chmp6P0C0A3 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
Chmp6P0C0A3 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Chmp6P0C0A3 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
Chmp6P0C0A3 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Chmp6P0C0A3 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Chmp6P0C0A3 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Chmp6P0C0A3 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC23.25■■□□□ 1.31
Chmp6P0C0A3 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
Chmp6P0C0A3 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Chmp6P0C0A3 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Chmp6P0C0A3 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
Chmp6P0C0A3 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC23.24■■□□□ 1.31
Chmp6P0C0A3 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC23.24■■□□□ 1.31
Chmp6P0C0A3 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Chmp6P0C0A3 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Chmp6P0C0A3 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
Chmp6P0C0A3 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Chmp6P0C0A3 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
Chmp6P0C0A3 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Chmp6P0C0A3 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Retrieved 100 of 76,532 protein–RNA pairs in 73.8 ms