Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Gm43321-201ENSMUST00000198897 2409 ntBASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Pck2-205ENSMUST00000226352 2784 ntBASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Gm42466-201ENSMUST00000202099 1301 ntBASIC12.88□□□□□ -0.35
Ddx28Q9CWT6 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Gm18889-201ENSMUST00000174284 929 ntBASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Gm38225-201ENSMUST00000194001 393 ntBASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx28Q9CWT6 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Gm13365-201ENSMUST00000121188 973 ntBASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Ighv8-7-201ENSMUST00000194349 297 ntBASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 AC158529.1-201ENSMUST00000223618 239 ntBASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx28Q9CWT6 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms