Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC18.72■□□□□ 0.59
Usp40Q8BWR4 CT573086.1-201ENSMUST00000227202 1074 ntBASIC18.72■□□□□ 0.59
Usp40Q8BWR4 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usp40Q8BWR4 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Usp40Q8BWR4 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Usp40Q8BWR4 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usp40Q8BWR4 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC18.72■□□□□ 0.59
Usp40Q8BWR4 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Usp40Q8BWR4 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Usp40Q8BWR4 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Usp40Q8BWR4 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Usp40Q8BWR4 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Usp40Q8BWR4 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Usp40Q8BWR4 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Usp40Q8BWR4 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
Usp40Q8BWR4 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Usp40Q8BWR4 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
Usp40Q8BWR4 Gm14350-201ENSMUST00000116642 640 ntBASIC18.71■□□□□ 0.59
Usp40Q8BWR4 Gm1335-201ENSMUST00000121653 386 ntBASIC18.71■□□□□ 0.59
Usp40Q8BWR4 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC18.71■□□□□ 0.59
Usp40Q8BWR4 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC18.71■□□□□ 0.59
Usp40Q8BWR4 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
Usp40Q8BWR4 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Usp40Q8BWR4 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
Usp40Q8BWR4 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC18.71■□□□□ 0.59
Usp40Q8BWR4 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Usp40Q8BWR4 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Usp40Q8BWR4 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC18.71■□□□□ 0.59
Usp40Q8BWR4 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC18.71■□□□□ 0.59
Usp40Q8BWR4 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Usp40Q8BWR4 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Gm18630-201ENSMUST00000222109 1397 ntBASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Gm15544-201ENSMUST00000118776 1531 ntBASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Gm38197-201ENSMUST00000192320 2122 ntBASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Gm37497-201ENSMUST00000195830 798 ntBASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Gm44064-201ENSMUST00000204964 1087 ntBASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Gm44974-201ENSMUST00000206387 1279 ntBASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Gm18054-201ENSMUST00000207539 555 ntBASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp40Q8BWR4 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Abhd6-203ENSMUST00000225234 1958 ntBASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp40Q8BWR4 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Gm12500-202ENSMUST00000186471 2428 ntBASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms