Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Gm27701-201ENSMUST00000184498 110 ntBASIC16.16■□□□□ 0.18
Trim56Q80VI1 Gm28911-201ENSMUST00000188837 117 ntBASIC16.16■□□□□ 0.18
Trim56Q80VI1 Gm29608-201ENSMUST00000190444 463 ntBASIC16.16■□□□□ 0.18
Trim56Q80VI1 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Trim56Q80VI1 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim56Q80VI1 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trim56Q80VI1 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Gm5912-201ENSMUST00000122282 1438 ntBASIC16.15■□□□□ 0.18
Trim56Q80VI1 Gm16342-201ENSMUST00000124025 1025 ntBASIC16.15■□□□□ 0.18
Trim56Q80VI1 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Gm17330-201ENSMUST00000221047 165 ntBASIC16.15■□□□□ 0.18
Trim56Q80VI1 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC16.15■□□□□ 0.18
Trim56Q80VI1 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim56Q80VI1 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
Trim56Q80VI1 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Trim56Q80VI1 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.18
Trim56Q80VI1 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
Trim56Q80VI1 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Gm2420-202ENSMUST00000202224 2249 ntBASIC16.14■□□□□ 0.17
Trim56Q80VI1 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim56Q80VI1 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC16.14■□□□□ 0.17
Trim56Q80VI1 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Acot6-202ENSMUST00000222921 3622 ntBASIC16.14■□□□□ 0.17
Trim56Q80VI1 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Gm11918-201ENSMUST00000121660 179 ntBASIC16.14■□□□□ 0.17
Trim56Q80VI1 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Gm5745-201ENSMUST00000183748 313 ntBASIC16.14■□□□□ 0.17
Trim56Q80VI1 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Gm17870-201ENSMUST00000219489 1174 ntBASIC16.14■□□□□ 0.17
Trim56Q80VI1 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim56Q80VI1 AC159649.2-201ENSMUST00000222984 3223 ntBASIC16.14■□□□□ 0.17
Trim56Q80VI1 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Gm15163-201ENSMUST00000120749 1302 ntBASIC16.14■□□□□ 0.17
Trim56Q80VI1 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim56Q80VI1 Gm44443-201ENSMUST00000204396 5633 ntBASIC16.14■□□□□ 0.17
Trim56Q80VI1 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Trim56Q80VI1 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms