Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
Trim27Q62158 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC16.83■□□□□ 0.29
Trim27Q62158 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
Trim27Q62158 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Trim27Q62158 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Trim27Q62158 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim27Q62158 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim27Q62158 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim27Q62158 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim27Q62158 Gm15770-201ENSMUST00000117498 584 ntBASIC16.83■□□□□ 0.28
Trim27Q62158 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC16.83■□□□□ 0.28
Trim27Q62158 Gm15376-201ENSMUST00000122258 783 ntBASIC16.83■□□□□ 0.28
Trim27Q62158 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC16.83■□□□□ 0.28
Trim27Q62158 Gm42612-201ENSMUST00000197986 623 ntBASIC16.83■□□□□ 0.28
Trim27Q62158 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim27Q62158 Gm5279-201ENSMUST00000199575 745 ntBASIC16.83■□□□□ 0.28
Trim27Q62158 Gm43170-201ENSMUST00000199827 612 ntBASIC16.83■□□□□ 0.28
Trim27Q62158 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Trim27Q62158 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Trim27Q62158 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC16.83■□□□□ 0.28
Trim27Q62158 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim27Q62158 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Trim27Q62158 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim27Q62158 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim27Q62158 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim27Q62158 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim27Q62158 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
Trim27Q62158 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim27Q62158 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim27Q62158 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Trim27Q62158 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Trim27Q62158 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
Trim27Q62158 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Trim27Q62158 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC16.82■□□□□ 0.28
Trim27Q62158 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC16.82■□□□□ 0.28
Trim27Q62158 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Trim27Q62158 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC16.82■□□□□ 0.28
Trim27Q62158 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC16.82■□□□□ 0.28
Trim27Q62158 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Trim27Q62158 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Trim27Q62158 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 Gm6198-201ENSMUST00000191337 2929 ntBASIC16.82■□□□□ 0.28
Trim27Q62158 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim27Q62158 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim27Q62158 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim27Q62158 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim27Q62158 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim27Q62158 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC16.81■□□□□ 0.28
Trim27Q62158 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim27Q62158 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim27Q62158 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim27Q62158 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC16.81■□□□□ 0.28
Trim27Q62158 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC16.81■□□□□ 0.28
Trim27Q62158 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC16.81■□□□□ 0.28
Trim27Q62158 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC16.81■□□□□ 0.28
Trim27Q62158 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
Trim27Q62158 Gm16215-201ENSMUST00000161990 637 ntBASIC16.81■□□□□ 0.28
Trim27Q62158 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim27Q62158 Gm28760-201ENSMUST00000185995 736 ntBASIC16.81■□□□□ 0.28
Trim27Q62158 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim27Q62158 Gm43094-201ENSMUST00000196549 921 ntBASIC16.81■□□□□ 0.28
Trim27Q62158 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim27Q62158 AC124732.1-201ENSMUST00000221551 910 ntBASIC16.81■□□□□ 0.28
Trim27Q62158 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim27Q62158 AC158982.1-201ENSMUST00000228377 901 ntBASIC16.81■□□□□ 0.28
Trim27Q62158 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim27Q62158 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim27Q62158 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Trim27Q62158 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim27Q62158 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim27Q62158 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim27Q62158 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Trim27Q62158 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim27Q62158 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim27Q62158 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim27Q62158 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim27Q62158 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim27Q62158 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim27Q62158 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms