Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3bQ3ULL6 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3bQ3ULL6 Gm37019-201ENSMUST00000192133 2134 ntBASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Gm42612-201ENSMUST00000197986 623 ntBASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Gm43170-201ENSMUST00000199827 612 ntBASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Gm44719-201ENSMUST00000206404 149 ntBASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Gm6218-201ENSMUST00000219812 628 ntBASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3bQ3ULL6 Syt7-205ENSMUST00000224135 1557 ntBASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Gm31326-201ENSMUST00000191856 1048 ntBASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3bQ3ULL6 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Acot6-202ENSMUST00000222921 3622 ntBASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Gm13859-201ENSMUST00000119936 1423 ntBASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 AC168058.1-201ENSMUST00000219521 2282 ntBASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms