Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Gm20632-201ENSMUST00000176760 2427 ntBASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Gm13410-201ENSMUST00000117058 1415 ntBASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Gm27622-201ENSMUST00000183779 60 ntBASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 CT025535.1-201ENSMUST00000227172 491 ntBASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Gm6018-201ENSMUST00000216090 1306 ntBASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col28a1Q2UY11 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Col28a1Q2UY11 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Col28a1Q2UY11 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Col28a1Q2UY11 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Col28a1Q2UY11 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Col28a1Q2UY11 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.27
Col28a1Q2UY11 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
Col28a1Q2UY11 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Gm7002-201ENSMUST00000221386 2165 ntBASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC13.33□□□□□ -0.28
Col28a1Q2UY11 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col28a1Q2UY11 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Gm28386-201ENSMUST00000189147 1849 ntBASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col28a1Q2UY11 Gm12462-201ENSMUST00000140826 3056 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms