Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msx3P70354 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msx3P70354 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msx3P70354 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Msx3P70354 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Msx3P70354 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC14.11□□□□□ -0.15
Msx3P70354 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Gm13859-201ENSMUST00000119936 1423 ntBASIC14.11□□□□□ -0.15
Msx3P70354 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Msx3P70354 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC14.11□□□□□ -0.15
Msx3P70354 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Gm38294-201ENSMUST00000192831 381 ntBASIC14.11□□□□□ -0.15
Msx3P70354 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC14.11□□□□□ -0.15
Msx3P70354 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Msx3P70354 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Gm37019-201ENSMUST00000192133 2134 ntBASIC14.11□□□□□ -0.15
Msx3P70354 Gm6198-201ENSMUST00000191337 2929 ntBASIC14.11□□□□□ -0.15
Msx3P70354 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx3P70354 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Msx3P70354 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msx3P70354 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msx3P70354 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Msx3P70354 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msx3P70354 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msx3P70354 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Msx3P70354 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Msx3P70354 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msx3P70354 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msx3P70354 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msx3P70354 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC14.1□□□□□ -0.15
Msx3P70354 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC14.1□□□□□ -0.15
Msx3P70354 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msx3P70354 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Msx3P70354 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Msx3P70354 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC14.1□□□□□ -0.15
Msx3P70354 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msx3P70354 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Msx3P70354 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msx3P70354 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Msx3P70354 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msx3P70354 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
Msx3P70354 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msx3P70354 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msx3P70354 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msx3P70354 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msx3P70354 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msx3P70354 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msx3P70354 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msx3P70354 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msx3P70354 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msx3P70354 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msx3P70354 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Msx3P70354 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC14.09□□□□□ -0.15
Msx3P70354 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msx3P70354 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msx3P70354 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC14.09□□□□□ -0.15
Msx3P70354 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Msx3P70354 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msx3P70354 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msx3P70354 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msx3P70354 Gm10327-201ENSMUST00000105222 1002 ntBASIC14.09□□□□□ -0.15
Msx3P70354 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
Msx3P70354 Cd63-ps-201ENSMUST00000145417 875 ntBASIC14.09□□□□□ -0.15
Msx3P70354 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC14.09□□□□□ -0.15
Msx3P70354 Gm5069-202ENSMUST00000192714 1011 ntBASIC14.09□□□□□ -0.15
Msx3P70354 Gm18041-201ENSMUST00000218210 618 ntBASIC14.09□□□□□ -0.15
Msx3P70354 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msx3P70354 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Msx3P70354 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msx3P70354 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Msx3P70354 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Msx3P70354 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msx3P70354 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Msx3P70354 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Msx3P70354 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msx3P70354 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msx3P70354 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msx3P70354 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms