Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Col18a1P39061 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col18a1P39061 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC17.74■□□□□ 0.43
Col18a1P39061 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col18a1P39061 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Col18a1P39061 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Col18a1P39061 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col18a1P39061 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col18a1P39061 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col18a1P39061 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col18a1P39061 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col18a1P39061 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC17.74■□□□□ 0.43
Col18a1P39061 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Col18a1P39061 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col18a1P39061 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col18a1P39061 Gm11211-201ENSMUST00000143618 359 ntTSL 3 BASIC17.74■□□□□ 0.43
Col18a1P39061 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC17.74■□□□□ 0.43
Col18a1P39061 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC17.74■□□□□ 0.43
Col18a1P39061 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC17.74■□□□□ 0.43
Col18a1P39061 Gm34809-203ENSMUST00000222945 509 ntTSL 5 BASIC17.74■□□□□ 0.43
Col18a1P39061 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col18a1P39061 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
Col18a1P39061 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col18a1P39061 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col18a1P39061 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Col18a1P39061 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col18a1P39061 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col18a1P39061 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col18a1P39061 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col18a1P39061 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col18a1P39061 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col18a1P39061 Gm11450-201ENSMUST00000121144 333 ntBASIC17.73■□□□□ 0.43
Col18a1P39061 Spx-202ENSMUST00000126521 357 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
Col18a1P39061 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC17.73■□□□□ 0.43
Col18a1P39061 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Col18a1P39061 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC17.73■□□□□ 0.43
Col18a1P39061 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC17.73■□□□□ 0.43
Col18a1P39061 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col18a1P39061 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col18a1P39061 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col18a1P39061 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Col18a1P39061 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC17.72■□□□□ 0.43
Col18a1P39061 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col18a1P39061 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col18a1P39061 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Col18a1P39061 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC17.72■□□□□ 0.43
Col18a1P39061 Gm9856-201ENSMUST00000217077 2578 ntBASIC17.72■□□□□ 0.43
Col18a1P39061 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col18a1P39061 Tead3-207ENSMUST00000219703 1320 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Col18a1P39061 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col18a1P39061 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col18a1P39061 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col18a1P39061 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col18a1P39061 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col18a1P39061 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC17.72■□□□□ 0.43
Col18a1P39061 Gm11675-201ENSMUST00000121873 832 ntBASIC17.72■□□□□ 0.43
Col18a1P39061 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC17.72■□□□□ 0.43
Col18a1P39061 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Col18a1P39061 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col18a1P39061 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Col18a1P39061 Gm37905-201ENSMUST00000195310 341 ntBASIC17.72■□□□□ 0.43
Col18a1P39061 Gm43416-201ENSMUST00000201916 1015 ntBASIC17.72■□□□□ 0.43
Col18a1P39061 Gm43916-201ENSMUST00000205062 967 ntBASIC17.72■□□□□ 0.43
Col18a1P39061 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col18a1P39061 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Col18a1P39061 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col18a1P39061 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC17.72■□□□□ 0.43
Col18a1P39061 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC17.72■□□□□ 0.43
Col18a1P39061 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col18a1P39061 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col18a1P39061 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col18a1P39061 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col18a1P39061 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
Col18a1P39061 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC17.71■□□□□ 0.43
Col18a1P39061 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC17.71■□□□□ 0.43
Col18a1P39061 Gm12015-201ENSMUST00000117065 843 ntBASIC17.71■□□□□ 0.43
Col18a1P39061 Gm15515-201ENSMUST00000117827 822 ntBASIC17.71■□□□□ 0.43
Col18a1P39061 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC17.71■□□□□ 0.43
Col18a1P39061 Olfr462-201ENSMUST00000049743 936 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Col18a1P39061 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col18a1P39061 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col18a1P39061 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col18a1P39061 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col18a1P39061 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col18a1P39061 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col18a1P39061 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col18a1P39061 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
Col18a1P39061 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col18a1P39061 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC17.71■□□□□ 0.43
Col18a1P39061 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Col18a1P39061 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col18a1P39061 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col18a1P39061 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col18a1P39061 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col18a1P39061 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col18a1P39061 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col18a1P39061 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col18a1P39061 Gm12798-201ENSMUST00000124786 666 ntTSL 5 BASIC17.71■□□□□ 0.43
Col18a1P39061 Gm7666-201ENSMUST00000146631 819 ntBASIC17.71■□□□□ 0.43
Col18a1P39061 Gm23363-201ENSMUST00000175024 79 ntBASIC17.71■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms