Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msx1P13297 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msx1P13297 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msx1P13297 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msx1P13297 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msx1P13297 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msx1P13297 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msx1P13297 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msx1P13297 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Msx1P13297 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msx1P13297 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Msx1P13297 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC13.07□□□□□ -0.32
Msx1P13297 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Mmp14-206ENSMUST00000225641 3238 ntBASIC13.07□□□□□ -0.32
Msx1P13297 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC13.07□□□□□ -0.32
Msx1P13297 2810433D01Rik-202ENSMUST00000154798 1045 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Mir1982-201ENSMUST00000157368 74 ntBASIC13.07□□□□□ -0.32
Msx1P13297 Gm22119-201ENSMUST00000175594 99 ntBASIC13.07□□□□□ -0.32
Msx1P13297 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC13.07□□□□□ -0.32
Msx1P13297 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC13.07□□□□□ -0.32
Msx1P13297 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC13.07□□□□□ -0.32
Msx1P13297 AC139580.1-202ENSMUST00000223574 928 ntBASIC13.07□□□□□ -0.32
Msx1P13297 CT009495.1-201ENSMUST00000224221 862 ntBASIC13.07□□□□□ -0.32
Msx1P13297 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC13.07□□□□□ -0.32
Msx1P13297 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC13.07□□□□□ -0.32
Msx1P13297 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Msx1P13297 Gm5169-201ENSMUST00000096469 768 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC13.07□□□□□ -0.32
Msx1P13297 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Gm26513-201ENSMUST00000181802 2489 ntBASIC13.07□□□□□ -0.32
Msx1P13297 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 AC115735.4-201ENSMUST00000227460 1944 ntBASIC13.07□□□□□ -0.32
Msx1P13297 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC13.07□□□□□ -0.32
Msx1P13297 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 AC126549.2-201ENSMUST00000223997 1976 ntBASIC13.07□□□□□ -0.32
Msx1P13297 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Msx1P13297 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 Gm28182-201ENSMUST00000188354 2477 ntBASIC13.06□□□□□ -0.32
Msx1P13297 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Msx1P13297 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC13.06□□□□□ -0.32
Msx1P13297 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC13.06□□□□□ -0.32
Msx1P13297 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Msx1P13297 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Msx1P13297 Gm15393-201ENSMUST00000120499 219 ntBASIC13.06□□□□□ -0.32
Msx1P13297 Vmn1r-ps144-201ENSMUST00000177291 939 ntBASIC13.06□□□□□ -0.32
Msx1P13297 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC13.06□□□□□ -0.32
Msx1P13297 Ighv8-14-201ENSMUST00000196781 358 ntBASIC13.06□□□□□ -0.32
Msx1P13297 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC13.06□□□□□ -0.32
Msx1P13297 AC153912.1-201ENSMUST00000217011 724 ntAPPRIS P1 TSL 3 BASIC13.06□□□□□ -0.32
Msx1P13297 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Msx1P13297 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Msx1P13297 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Msx1P13297 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Msx1P13297 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 AC114008.2-201ENSMUST00000227699 1347 ntBASIC13.06□□□□□ -0.32
Msx1P13297 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
Msx1P13297 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Msx1P13297 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Msx1P13297 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms