Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Gm18889-201ENSMUST00000174284 929 ntBASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC13.58□□□□□ -0.24
Lima1Q9ERG0 AC123645.1-201ENSMUST00000228469 605 ntBASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lima1Q9ERG0 Ssr1-203ENSMUST00000225246 1825 ntBASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Gm38225-201ENSMUST00000194001 393 ntBASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Gm6018-201ENSMUST00000216090 1306 ntBASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Lima1Q9ERG0 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Gm24513-201ENSMUST00000174964 138 ntBASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 AC158529.1-201ENSMUST00000223618 239 ntBASIC13.56□□□□□ -0.24
Lima1Q9ERG0 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Gm5648-201ENSMUST00000122244 1587 ntBASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Gm42466-201ENSMUST00000202099 1301 ntBASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Lima1Q9ERG0 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms