Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
Trim28Q62318 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim28Q62318 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim28Q62318 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Trim28Q62318 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC17.71■□□□□ 0.43
Trim28Q62318 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
Trim28Q62318 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim28Q62318 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
Trim28Q62318 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trim28Q62318 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC17.71■□□□□ 0.43
Trim28Q62318 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Trim28Q62318 Gm13369-201ENSMUST00000119442 987 ntBASIC17.71■□□□□ 0.43
Trim28Q62318 Gm7029-201ENSMUST00000173226 450 ntBASIC17.71■□□□□ 0.43
Trim28Q62318 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC17.71■□□□□ 0.43
Trim28Q62318 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
Trim28Q62318 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Trim28Q62318 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC17.71■□□□□ 0.43
Trim28Q62318 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trim28Q62318 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim28Q62318 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim28Q62318 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim28Q62318 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim28Q62318 Gm12626-201ENSMUST00000117339 1983 ntBASIC17.71■□□□□ 0.43
Trim28Q62318 Gm12623-201ENSMUST00000119849 1983 ntBASIC17.71■□□□□ 0.43
Trim28Q62318 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trim28Q62318 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
Trim28Q62318 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim28Q62318 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
Trim28Q62318 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Trim28Q62318 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
Trim28Q62318 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim28Q62318 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Trim28Q62318 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim28Q62318 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim28Q62318 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim28Q62318 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim28Q62318 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim28Q62318 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim28Q62318 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Trim28Q62318 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim28Q62318 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim28Q62318 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim28Q62318 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim28Q62318 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC17.7■□□□□ 0.42
Trim28Q62318 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
Trim28Q62318 Gm26927-201ENSMUST00000182385 965 ntBASIC17.7■□□□□ 0.42
Trim28Q62318 Gm8565-201ENSMUST00000183259 1014 ntBASIC17.7■□□□□ 0.42
Trim28Q62318 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Trim28Q62318 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC17.7■□□□□ 0.42
Trim28Q62318 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim28Q62318 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim28Q62318 Gm10339-203ENSMUST00000225409 1671 ntBASIC17.7■□□□□ 0.42
Trim28Q62318 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Trim28Q62318 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim28Q62318 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim28Q62318 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim28Q62318 Tmed9-203ENSMUST00000224741 1450 ntBASIC17.69■□□□□ 0.42
Trim28Q62318 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim28Q62318 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim28Q62318 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trim28Q62318 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Trim28Q62318 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Trim28Q62318 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim28Q62318 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
Trim28Q62318 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim28Q62318 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim28Q62318 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC17.69■□□□□ 0.42
Trim28Q62318 AC122305.4-201ENSMUST00000216159 1206 ntBASIC17.69■□□□□ 0.42
Trim28Q62318 AC134335.2-201ENSMUST00000227660 440 ntBASIC17.69■□□□□ 0.42
Trim28Q62318 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim28Q62318 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim28Q62318 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim28Q62318 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trim28Q62318 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim28Q62318 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Trim28Q62318 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim28Q62318 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim28Q62318 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim28Q62318 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim28Q62318 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim28Q62318 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim28Q62318 Gm10729-202ENSMUST00000193403 1375 ntBASIC17.68■□□□□ 0.42
Trim28Q62318 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC17.68■□□□□ 0.42
Trim28Q62318 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC17.68■□□□□ 0.42
Trim28Q62318 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim28Q62318 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim28Q62318 Gm43273-201ENSMUST00000199649 2594 ntBASIC17.68■□□□□ 0.42
Trim28Q62318 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim28Q62318 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim28Q62318 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Trim28Q62318 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC17.68■□□□□ 0.42
Trim28Q62318 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim28Q62318 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim28Q62318 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim28Q62318 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC17.68■□□□□ 0.42
Trim28Q62318 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 53.4 ms