Protein–RNA interactions for Protein: Q5NCC9

Trim58, E3 ubiquitin-protein ligase TRIM58, mousemouse

Predictions only

Length 485 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim58Q5NCC9 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC17.4■□□□□ 0.38
Trim58Q5NCC9 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim58Q5NCC9 AC159621.2-201ENSMUST00000223519 1326 ntBASIC17.4■□□□□ 0.38
Trim58Q5NCC9 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim58Q5NCC9 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim58Q5NCC9 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim58Q5NCC9 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim58Q5NCC9 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Trim58Q5NCC9 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim58Q5NCC9 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC17.4■□□□□ 0.38
Trim58Q5NCC9 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim58Q5NCC9 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim58Q5NCC9 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Trim58Q5NCC9 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
Trim58Q5NCC9 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Gm20632-201ENSMUST00000176760 2427 ntBASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Gm25925-201ENSMUST00000158314 306 ntBASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trim58Q5NCC9 AC154846.1-201ENSMUST00000226278 862 ntBASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Gm28386-201ENSMUST00000189147 1849 ntBASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Gm38346-201ENSMUST00000192379 2639 ntBASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Grk6-205ENSMUST00000224653 2976 ntBASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC17.39■□□□□ 0.37
Trim58Q5NCC9 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim58Q5NCC9 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim58Q5NCC9 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim58Q5NCC9 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim58Q5NCC9 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim58Q5NCC9 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
Trim58Q5NCC9 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim58Q5NCC9 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trim58Q5NCC9 Gm10327-201ENSMUST00000105222 1002 ntBASIC17.38■□□□□ 0.37
Trim58Q5NCC9 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim58Q5NCC9 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
Trim58Q5NCC9 Gm5069-202ENSMUST00000192714 1011 ntBASIC17.38■□□□□ 0.37
Trim58Q5NCC9 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC17.38■□□□□ 0.37
Trim58Q5NCC9 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim58Q5NCC9 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim58Q5NCC9 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trim58Q5NCC9 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim58Q5NCC9 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim58Q5NCC9 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Trim58Q5NCC9 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim58Q5NCC9 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim58Q5NCC9 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim58Q5NCC9 AC124751.1-201ENSMUST00000222716 1408 ntBASIC17.38■□□□□ 0.37
Trim58Q5NCC9 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trim58Q5NCC9 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Gm45779-201ENSMUST00000212189 4064 ntBASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Gm42690-201ENSMUST00000197921 1836 ntBASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim58Q5NCC9 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC17.36■□□□□ 0.37
Trim58Q5NCC9 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim58Q5NCC9 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC17.36■□□□□ 0.37
Trim58Q5NCC9 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim58Q5NCC9 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim58Q5NCC9 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim58Q5NCC9 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC17.36■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms