Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Shox2P70390 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Shox2P70390 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Shox2P70390 Gm28323-201ENSMUST00000186817 2499 ntBASIC13.59□□□□□ -0.23
Shox2P70390 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Shox2P70390 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
Shox2P70390 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Shox2P70390 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Shox2P70390 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Shox2P70390 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Shox2P70390 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Shox2P70390 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Shox2P70390 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
Shox2P70390 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Shox2P70390 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Shox2P70390 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Shox2P70390 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Shox2P70390 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Shox2P70390 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Shox2P70390 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Shox2P70390 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.23
Shox2P70390 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Shox2P70390 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Shox2P70390 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Shox2P70390 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
Shox2P70390 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Shox2P70390 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Shox2P70390 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC13.58□□□□□ -0.24
Shox2P70390 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC13.58□□□□□ -0.24
Shox2P70390 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Shox2P70390 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Shox2P70390 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Shox2P70390 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Shox2P70390 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Shox2P70390 Gm27704-201ENSMUST00000185094 107 ntBASIC13.58□□□□□ -0.24
Shox2P70390 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Shox2P70390 Ighv8-14-201ENSMUST00000196781 358 ntBASIC13.58□□□□□ -0.24
Shox2P70390 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC13.58□□□□□ -0.24
Shox2P70390 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Shox2P70390 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Shox2P70390 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Shox2P70390 Gm5989-201ENSMUST00000096092 2077 ntBASIC13.58□□□□□ -0.24
Shox2P70390 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Shox2P70390 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Shox2P70390 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
Shox2P70390 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Shox2P70390 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Shox2P70390 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Shox2P70390 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Shox2P70390 Gm44401-201ENSMUST00000204462 2375 ntBASIC13.58□□□□□ -0.24
Shox2P70390 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Shox2P70390 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Shox2P70390 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Shox2P70390 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Shox2P70390 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Shox2P70390 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Shox2P70390 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Shox2P70390 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Shox2P70390 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Shox2P70390 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Shox2P70390 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Shox2P70390 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
Shox2P70390 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Shox2P70390 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Shox2P70390 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC13.57□□□□□ -0.24
Shox2P70390 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Shox2P70390 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Shox2P70390 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Shox2P70390 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Shox2P70390 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Shox2P70390 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Shox2P70390 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Shox2P70390 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
Shox2P70390 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC13.57□□□□□ -0.24
Shox2P70390 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC13.57□□□□□ -0.24
Shox2P70390 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC13.57□□□□□ -0.24
Shox2P70390 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Shox2P70390 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Shox2P70390 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Shox2P70390 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Shox2P70390 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Shox2P70390 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Shox2P70390 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Shox2P70390 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Shox2P70390 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Shox2P70390 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC13.56□□□□□ -0.24
Shox2P70390 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Shox2P70390 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Shox2P70390 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Shox2P70390 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Shox2P70390 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Shox2P70390 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Shox2P70390 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Shox2P70390 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Shox2P70390 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Shox2P70390 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC13.56□□□□□ -0.24
Shox2P70390 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Shox2P70390 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Shox2P70390 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC13.56□□□□□ -0.24
Shox2P70390 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC13.56□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms