Protein–RNA interactions for Protein: P54276

Msh6, DNA mismatch repair protein Msh6, mousemouse

Known RBP Predictions only

Length 1,358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh6P54276 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msh6P54276 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Msh6P54276 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC17.3■□□□□ 0.36
Msh6P54276 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msh6P54276 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msh6P54276 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Msh6P54276 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msh6P54276 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msh6P54276 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC17.3■□□□□ 0.36
Msh6P54276 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msh6P54276 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC17.3■□□□□ 0.36
Msh6P54276 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msh6P54276 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msh6P54276 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Msh6P54276 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msh6P54276 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msh6P54276 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Msh6P54276 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msh6P54276 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msh6P54276 Gm11793-201ENSMUST00000120433 981 ntBASIC17.29■□□□□ 0.36
Msh6P54276 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Msh6P54276 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC17.29■□□□□ 0.36
Msh6P54276 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC17.29■□□□□ 0.36
Msh6P54276 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC17.29■□□□□ 0.36
Msh6P54276 Gm26927-201ENSMUST00000182385 965 ntBASIC17.29■□□□□ 0.36
Msh6P54276 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC17.29■□□□□ 0.36
Msh6P54276 Gm37008-201ENSMUST00000195712 319 ntBASIC17.29■□□□□ 0.36
Msh6P54276 Gm43133-201ENSMUST00000197472 463 ntBASIC17.29■□□□□ 0.36
Msh6P54276 Gm43758-201ENSMUST00000199500 367 ntBASIC17.29■□□□□ 0.36
Msh6P54276 Gm18056-201ENSMUST00000207670 568 ntBASIC17.29■□□□□ 0.36
Msh6P54276 Gm18061-201ENSMUST00000208350 562 ntBASIC17.29■□□□□ 0.36
Msh6P54276 Gm18063-201ENSMUST00000208529 568 ntBASIC17.29■□□□□ 0.36
Msh6P54276 Gm18052-201ENSMUST00000208750 559 ntBASIC17.29■□□□□ 0.36
Msh6P54276 Itm2b-204ENSMUST00000228637 783 ntBASIC17.29■□□□□ 0.36
Msh6P54276 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msh6P54276 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msh6P54276 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msh6P54276 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msh6P54276 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msh6P54276 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msh6P54276 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msh6P54276 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Msh6P54276 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Msh6P54276 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msh6P54276 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Msh6P54276 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC17.28■□□□□ 0.36
Msh6P54276 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC17.28■□□□□ 0.36
Msh6P54276 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC17.28■□□□□ 0.36
Msh6P54276 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Gm42929-201ENSMUST00000198374 1286 ntBASIC17.28■□□□□ 0.36
Msh6P54276 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC17.28■□□□□ 0.36
Msh6P54276 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Gm5620-201ENSMUST00000077991 1348 ntBASIC17.28■□□□□ 0.36
Msh6P54276 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC17.28■□□□□ 0.36
Msh6P54276 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 AC139350.1-201ENSMUST00000227064 1594 ntBASIC17.28■□□□□ 0.36
Msh6P54276 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Msh6P54276 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Msh6P54276 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Msh6P54276 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Msh6P54276 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC17.28■□□□□ 0.36
Msh6P54276 AC159747.1-201ENSMUST00000219903 265 ntBASIC17.28■□□□□ 0.36
Msh6P54276 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC17.28■□□□□ 0.36
Msh6P54276 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msh6P54276 Gm3695-201ENSMUST00000087222 1009 ntBASIC17.28■□□□□ 0.36
Msh6P54276 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Msh6P54276 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
Msh6P54276 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Msh6P54276 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Msh6P54276 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Msh6P54276 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Msh6P54276 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Msh6P54276 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC17.27■□□□□ 0.36
Msh6P54276 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Msh6P54276 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Msh6P54276 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Msh6P54276 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC17.27■□□□□ 0.36
Msh6P54276 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms