Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col18a1P39061 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC17.78■□□□□ 0.44
Col18a1P39061 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC17.78■□□□□ 0.44
Col18a1P39061 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col18a1P39061 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC17.78■□□□□ 0.44
Col18a1P39061 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col18a1P39061 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col18a1P39061 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col18a1P39061 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Col18a1P39061 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col18a1P39061 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC17.78■□□□□ 0.44
Col18a1P39061 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col18a1P39061 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col18a1P39061 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC17.78■□□□□ 0.44
Col18a1P39061 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Col18a1P39061 Gm9062-201ENSMUST00000117712 727 ntBASIC17.78■□□□□ 0.44
Col18a1P39061 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC17.78■□□□□ 0.44
Col18a1P39061 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC17.78■□□□□ 0.44
Col18a1P39061 AC132901.1-201ENSMUST00000224345 508 ntBASIC17.78■□□□□ 0.44
Col18a1P39061 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col18a1P39061 Rln1-201ENSMUST00000044143 745 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col18a1P39061 Gm21411-201ENSMUST00000049821 750 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col18a1P39061 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col18a1P39061 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC17.78■□□□□ 0.44
Col18a1P39061 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col18a1P39061 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col18a1P39061 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col18a1P39061 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Col18a1P39061 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col18a1P39061 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col18a1P39061 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col18a1P39061 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
Col18a1P39061 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Col18a1P39061 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col18a1P39061 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
Col18a1P39061 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col18a1P39061 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col18a1P39061 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col18a1P39061 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC17.77■□□□□ 0.44
Col18a1P39061 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC17.77■□□□□ 0.44
Col18a1P39061 Gm32999-201ENSMUST00000192693 562 ntBASIC17.77■□□□□ 0.44
Col18a1P39061 4930448E22Rik-203ENSMUST00000215349 299 ntTSL 3 BASIC17.77■□□□□ 0.44
Col18a1P39061 AC166992.1-201ENSMUST00000216356 565 ntBASIC17.77■□□□□ 0.44
Col18a1P39061 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col18a1P39061 Lce1e-201ENSMUST00000090867 711 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col18a1P39061 Tubb4b-ps2-201ENSMUST00000187481 1337 ntBASIC17.77■□□□□ 0.44
Col18a1P39061 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col18a1P39061 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col18a1P39061 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
Col18a1P39061 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col18a1P39061 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col18a1P39061 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col18a1P39061 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col18a1P39061 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC17.77■□□□□ 0.43
Col18a1P39061 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col18a1P39061 Fbxl12-205ENSMUST00000140702 1555 ntBASIC17.76■□□□□ 0.43
Col18a1P39061 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col18a1P39061 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC17.76■□□□□ 0.43
Col18a1P39061 Prm3-201ENSMUST00000050864 410 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Col18a1P39061 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col18a1P39061 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col18a1P39061 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col18a1P39061 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col18a1P39061 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col18a1P39061 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col18a1P39061 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Col18a1P39061 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col18a1P39061 Mir6546-201ENSMUST00000184460 62 ntBASIC17.76■□□□□ 0.43
Col18a1P39061 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col18a1P39061 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col18a1P39061 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Col18a1P39061 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Col18a1P39061 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC17.76■□□□□ 0.43
Col18a1P39061 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col18a1P39061 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col18a1P39061 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col18a1P39061 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col18a1P39061 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC17.75■□□□□ 0.43
Col18a1P39061 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC17.75■□□□□ 0.43
Col18a1P39061 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC17.75■□□□□ 0.43
Col18a1P39061 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col18a1P39061 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC17.75■□□□□ 0.43
Col18a1P39061 Ankrd7-201ENSMUST00000031489 1190 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col18a1P39061 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col18a1P39061 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
Col18a1P39061 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
Col18a1P39061 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Col18a1P39061 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col18a1P39061 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col18a1P39061 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col18a1P39061 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Col18a1P39061 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col18a1P39061 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Col18a1P39061 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Col18a1P39061 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col18a1P39061 Gm6506-201ENSMUST00000119775 1136 ntBASIC17.74■□□□□ 0.43
Col18a1P39061 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC17.74■□□□□ 0.43
Col18a1P39061 Gm14832-201ENSMUST00000121289 322 ntBASIC17.74■□□□□ 0.43
Col18a1P39061 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC17.74■□□□□ 0.43
Col18a1P39061 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms