Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp4P35123 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp4P35123 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
Usp4P35123 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Usp4P35123 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 Ssr1-203ENSMUST00000225246 1825 ntBASIC14.43□□□□□ -0.1
Usp4P35123 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Usp4P35123 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
Usp4P35123 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC14.43□□□□□ -0.1
Usp4P35123 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Usp4P35123 Gm18737-201ENSMUST00000173594 937 ntBASIC14.43□□□□□ -0.1
Usp4P35123 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Usp4P35123 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC14.43□□□□□ -0.1
Usp4P35123 Wdyhv1-206ENSMUST00000227142 786 ntBASIC14.43□□□□□ -0.1
Usp4P35123 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Usp4P35123 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC14.43□□□□□ -0.1
Usp4P35123 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 AC154725.1-201ENSMUST00000224826 1961 ntBASIC14.43□□□□□ -0.1
Usp4P35123 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC14.43□□□□□ -0.1
Usp4P35123 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Usp4P35123 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC14.42□□□□□ -0.1
Usp4P35123 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC14.42□□□□□ -0.1
Usp4P35123 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Usp4P35123 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Usp4P35123 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Usp4P35123 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Usp4P35123 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Usp4P35123 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Usp4P35123 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Usp4P35123 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Usp4P35123 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Usp4P35123 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC14.42□□□□□ -0.1
Usp4P35123 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Usp4P35123 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC14.42□□□□□ -0.1
Usp4P35123 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Usp4P35123 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Usp4P35123 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC14.42□□□□□ -0.1
Usp4P35123 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC14.42□□□□□ -0.1
Usp4P35123 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC14.42□□□□□ -0.1
Usp4P35123 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
Usp4P35123 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Usp4P35123 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
Usp4P35123 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Usp4P35123 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Usp4P35123 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
Usp4P35123 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Usp4P35123 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Usp4P35123 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Usp4P35123 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
Usp4P35123 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC14.42□□□□□ -0.1
Usp4P35123 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Usp4P35123 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Usp4P35123 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Usp4P35123 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usp4P35123 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC14.41□□□□□ -0.1
Usp4P35123 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Usp4P35123 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usp4P35123 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usp4P35123 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usp4P35123 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usp4P35123 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usp4P35123 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usp4P35123 Gm11543-201ENSMUST00000120758 370 ntBASIC14.41□□□□□ -0.1
Usp4P35123 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC14.41□□□□□ -0.1
Usp4P35123 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC14.41□□□□□ -0.1
Usp4P35123 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Usp4P35123 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Usp4P35123 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Usp4P35123 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC14.41□□□□□ -0.1
Usp4P35123 Gm5186-201ENSMUST00000218781 920 ntBASIC14.41□□□□□ -0.1
Usp4P35123 CT030684.1-201ENSMUST00000227292 914 ntBASIC14.41□□□□□ -0.1
Usp4P35123 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usp4P35123 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usp4P35123 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usp4P35123 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Usp4P35123 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
Usp4P35123 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Usp4P35123 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Usp4P35123 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Usp4P35123 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms