Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col5a1O88207 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col5a1O88207 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col5a1O88207 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col5a1O88207 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col5a1O88207 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC12.22□□□□□ -0.45
Col5a1O88207 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col5a1O88207 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col5a1O88207 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col5a1O88207 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col5a1O88207 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Col5a1O88207 Gm4986-201ENSMUST00000119731 549 ntBASIC12.21□□□□□ -0.45
Col5a1O88207 Gm2260-201ENSMUST00000184965 657 ntBASIC12.21□□□□□ -0.45
Col5a1O88207 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.45
Col5a1O88207 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC12.21□□□□□ -0.45
Col5a1O88207 Gm8959-201ENSMUST00000213150 571 ntBASIC12.21□□□□□ -0.45
Col5a1O88207 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC12.21□□□□□ -0.45
Col5a1O88207 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC12.21□□□□□ -0.45
Col5a1O88207 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Col5a1O88207 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col5a1O88207 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col5a1O88207 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col5a1O88207 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Col5a1O88207 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC12.21□□□□□ -0.45
Col5a1O88207 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col5a1O88207 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC12.21□□□□□ -0.46
Col5a1O88207 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Col5a1O88207 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col5a1O88207 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col5a1O88207 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col5a1O88207 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col5a1O88207 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col5a1O88207 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col5a1O88207 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col5a1O88207 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col5a1O88207 Gm13297-201ENSMUST00000120205 934 ntBASIC12.21□□□□□ -0.46
Col5a1O88207 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC12.21□□□□□ -0.46
Col5a1O88207 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.46
Col5a1O88207 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Col5a1O88207 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Col5a1O88207 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.46
Col5a1O88207 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col5a1O88207 Gm6222-202ENSMUST00000182143 629 ntBASIC12.21□□□□□ -0.46
Col5a1O88207 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC12.21□□□□□ -0.46
Col5a1O88207 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC12.21□□□□□ -0.46
Col5a1O88207 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC12.21□□□□□ -0.46
Col5a1O88207 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Col5a1O88207 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Col5a1O88207 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Col5a1O88207 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Col5a1O88207 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC12.2□□□□□ -0.46
Col5a1O88207 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC12.2□□□□□ -0.46
Col5a1O88207 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC12.2□□□□□ -0.46
Col5a1O88207 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Col5a1O88207 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Col5a1O88207 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC12.2□□□□□ -0.46
Col5a1O88207 Gm11628-201ENSMUST00000117568 171 ntBASIC12.2□□□□□ -0.46
Col5a1O88207 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC12.2□□□□□ -0.46
Col5a1O88207 Gm13369-201ENSMUST00000119442 987 ntBASIC12.2□□□□□ -0.46
Col5a1O88207 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Gm25732-201ENSMUST00000175168 60 ntBASIC12.2□□□□□ -0.46
Col5a1O88207 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC12.2□□□□□ -0.46
Col5a1O88207 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC12.2□□□□□ -0.46
Col5a1O88207 Gm2824-203ENSMUST00000226189 1228 ntBASIC12.2□□□□□ -0.46
Col5a1O88207 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 n-R5s195-201ENSMUST00000082891 119 ntBASIC12.2□□□□□ -0.46
Col5a1O88207 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
Col5a1O88207 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC12.2□□□□□ -0.46
Col5a1O88207 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Col5a1O88207 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Col5a1O88207 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col5a1O88207 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Col5a1O88207 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Col5a1O88207 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 60.7 ms