Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 AC153961.1-201ENSMUST00000217760 385 ntBASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Prpf40aQ9R1C7 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Gm12020-201ENSMUST00000119030 2042 ntBASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Gm15460-201ENSMUST00000118147 391 ntBASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Gm45691-201ENSMUST00000206905 1120 ntBASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Gm7775-201ENSMUST00000218871 853 ntBASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Gm18027-201ENSMUST00000218947 619 ntBASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
Prpf40aQ9R1C7 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC15.16■□□□□ 0.02
Prpf40aQ9R1C7 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Prpf40aQ9R1C7 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Prpf40aQ9R1C7 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Prpf40aQ9R1C7 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Prpf40aQ9R1C7 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Prpf40aQ9R1C7 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Prpf40aQ9R1C7 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC15.16■□□□□ 0.02
Prpf40aQ9R1C7 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Prpf40aQ9R1C7 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Prpf40aQ9R1C7 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
Prpf40aQ9R1C7 AC153872.1-201ENSMUST00000199539 128 ntBASIC15.16■□□□□ 0.02
Prpf40aQ9R1C7 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC15.16■□□□□ 0.02
Prpf40aQ9R1C7 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Prpf40aQ9R1C7 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Prpf40aQ9R1C7 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Prpf40aQ9R1C7 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Prpf40aQ9R1C7 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Prpf40aQ9R1C7 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Prpf40aQ9R1C7 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
Prpf40aQ9R1C7 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Prpf40aQ9R1C7 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Prpf40aQ9R1C7 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Gm12585-201ENSMUST00000117307 290 ntBASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Gm15393-201ENSMUST00000120499 219 ntBASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Mir8102-201ENSMUST00000184148 139 ntBASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Gm37714-201ENSMUST00000194742 342 ntBASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms