Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Cpsf3Q9QXK7 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cpsf3Q9QXK7 AC131997.1-201ENSMUST00000228611 1229 ntBASIC14.79□□□□□ -0.04
Cpsf3Q9QXK7 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cpsf3Q9QXK7 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cpsf3Q9QXK7 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cpsf3Q9QXK7 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Cpsf3Q9QXK7 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cpsf3Q9QXK7 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cpsf3Q9QXK7 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Cpsf3Q9QXK7 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cpsf3Q9QXK7 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cpsf3Q9QXK7 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Cpsf3Q9QXK7 Gm43056-201ENSMUST00000197865 2791 ntBASIC14.79□□□□□ -0.04
Cpsf3Q9QXK7 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Gm44719-201ENSMUST00000206404 149 ntBASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 AC156560.2-201ENSMUST00000221232 264 ntBASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cpsf3Q9QXK7 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cpsf3Q9QXK7 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cpsf3Q9QXK7 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cpsf3Q9QXK7 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cpsf3Q9QXK7 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cpsf3Q9QXK7 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cpsf3Q9QXK7 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cpsf3Q9QXK7 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Cpsf3Q9QXK7 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cpsf3Q9QXK7 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cpsf3Q9QXK7 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
Cpsf3Q9QXK7 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cpsf3Q9QXK7 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cpsf3Q9QXK7 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Cpsf3Q9QXK7 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cpsf3Q9QXK7 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cpsf3Q9QXK7 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Gm12485-201ENSMUST00000119641 291 ntBASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Gm12091-201ENSMUST00000146791 830 ntBASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Gm6745-201ENSMUST00000199216 526 ntBASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Gm9794-201ENSMUST00000202370 423 ntBASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 AC192088.1-201ENSMUST00000227561 301 ntBASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cpsf3Q9QXK7 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Cpsf3Q9QXK7 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms