Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC16.63■□□□□ 0.25
Brf1Q8CFK2 AC139580.1-202ENSMUST00000223574 928 ntBASIC16.63■□□□□ 0.25
Brf1Q8CFK2 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Brf1Q8CFK2 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Brf1Q8CFK2 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Brf1Q8CFK2 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Brf1Q8CFK2 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Brf1Q8CFK2 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Brf1Q8CFK2 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Brf1Q8CFK2 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Brf1Q8CFK2 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Gm3365-201ENSMUST00000216296 1480 ntBASIC16.62■□□□□ 0.25
Brf1Q8CFK2 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Gm45195-201ENSMUST00000205597 1008 ntBASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Gm44855-201ENSMUST00000205725 362 ntBASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Gm18934-201ENSMUST00000216671 1044 ntBASIC16.62■□□□□ 0.25
Brf1Q8CFK2 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 AC159649.2-201ENSMUST00000222984 3223 ntBASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Brf1Q8CFK2 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Gm42612-201ENSMUST00000197986 623 ntBASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Gm43170-201ENSMUST00000199827 612 ntBASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Gm6218-201ENSMUST00000219812 628 ntBASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Gm5626-201ENSMUST00000222151 1058 ntBASIC16.61■□□□□ 0.25
Brf1Q8CFK2 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Gm2420-202ENSMUST00000202224 2249 ntBASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Gm13859-201ENSMUST00000119936 1423 ntBASIC16.61■□□□□ 0.25
Brf1Q8CFK2 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Brf1Q8CFK2 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Gm38037-201ENSMUST00000192600 1624 ntBASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Gm28760-201ENSMUST00000185995 736 ntBASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Gm7730-201ENSMUST00000212486 454 ntBASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Matn2-206ENSMUST00000228570 2798 ntBASIC16.6■□□□□ 0.25
Brf1Q8CFK2 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 50.6 ms