Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps53Q8CCB4 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps53Q8CCB4 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Gm9115-201ENSMUST00000120192 1348 ntBASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Vps53Q8CCB4 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Gm43056-201ENSMUST00000197865 2791 ntBASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Gm9522-201ENSMUST00000182394 926 ntBASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Gm9908-201ENSMUST00000211534 448 ntBASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Gm15823-201ENSMUST00000064305 670 ntBASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps53Q8CCB4 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Vps53Q8CCB4 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Vps53Q8CCB4 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Vps53Q8CCB4 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Vps53Q8CCB4 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
Vps53Q8CCB4 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Vps53Q8CCB4 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Vps53Q8CCB4 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Vps53Q8CCB4 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Vps53Q8CCB4 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC16.02■□□□□ 0.16
Vps53Q8CCB4 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Vps53Q8CCB4 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
Vps53Q8CCB4 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Vps53Q8CCB4 Gm12138-201ENSMUST00000122180 951 ntBASIC16.02■□□□□ 0.16
Vps53Q8CCB4 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC16.02■□□□□ 0.16
Vps53Q8CCB4 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Vps53Q8CCB4 Gm37748-201ENSMUST00000194379 1140 ntBASIC16.02■□□□□ 0.16
Vps53Q8CCB4 Gm45668-201ENSMUST00000211271 493 ntBASIC16.02■□□□□ 0.16
Vps53Q8CCB4 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC16.02■□□□□ 0.16
Vps53Q8CCB4 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Vps53Q8CCB4 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
Vps53Q8CCB4 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Vps53Q8CCB4 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Vps53Q8CCB4 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Vps53Q8CCB4 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Vps53Q8CCB4 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
Vps53Q8CCB4 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Vps53Q8CCB4 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Vps53Q8CCB4 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms