Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Gm38223-201ENSMUST00000194484 695 ntBASIC11.88□□□□□ -0.51
Nkx3-1P97436 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC11.88□□□□□ -0.51
Nkx3-1P97436 AC166997.1-201ENSMUST00000225122 572 ntBASIC11.88□□□□□ -0.51
Nkx3-1P97436 AC140451.2-201ENSMUST00000228030 664 ntBASIC11.88□□□□□ -0.51
Nkx3-1P97436 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Nkx3-1P97436 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Gm43509-201ENSMUST00000196551 2594 ntBASIC11.87□□□□□ -0.51
Nkx3-1P97436 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Gm43205-201ENSMUST00000198622 1968 ntBASIC11.87□□□□□ -0.51
Nkx3-1P97436 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Nkx3-1P97436 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Mir698-201ENSMUST00000102164 109 ntBASIC11.87□□□□□ -0.51
Nkx3-1P97436 Gm14660-201ENSMUST00000119809 575 ntBASIC11.87□□□□□ -0.51
Nkx3-1P97436 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC11.87□□□□□ -0.51
Nkx3-1P97436 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Gm27731-201ENSMUST00000185192 107 ntBASIC11.87□□□□□ -0.51
Nkx3-1P97436 Gm4971-201ENSMUST00000205991 1108 ntBASIC11.87□□□□□ -0.51
Nkx3-1P97436 Gm9299-201ENSMUST00000206392 1140 ntBASIC11.87□□□□□ -0.51
Nkx3-1P97436 AC131690.1-201ENSMUST00000218406 374 ntBASIC11.87□□□□□ -0.51
Nkx3-1P97436 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Nkx3-1P97436 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Nkx3-1P97436 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Gm10676-201ENSMUST00000098778 3221 ntBASIC11.86□□□□□ -0.51
Nkx3-1P97436 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Snora78-201ENSMUST00000158630 128 ntBASIC11.86□□□□□ -0.51
Nkx3-1P97436 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
Nkx3-1P97436 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC11.86□□□□□ -0.51
Nkx3-1P97436 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Gm44397-201ENSMUST00000195950 113 ntBASIC11.86□□□□□ -0.51
Nkx3-1P97436 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC11.86□□□□□ -0.51
Nkx3-1P97436 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC11.86□□□□□ -0.51
Nkx3-1P97436 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC11.86□□□□□ -0.51
Nkx3-1P97436 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 58.2 ms