Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Ighv5-13-201ENSMUST00000193550 290 ntBASIC14.55□□□□□ -0.08
Shmt1P50431 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Shmt1P50431 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Shmt1P50431 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Shmt1P50431 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC14.55□□□□□ -0.08
Shmt1P50431 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Shmt1P50431 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Shmt1P50431 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Shmt1P50431 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Shmt1P50431 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Shmt1P50431 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Shmt1P50431 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Shmt1P50431 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Shmt1P50431 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Shmt1P50431 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Shmt1P50431 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Shmt1P50431 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Shmt1P50431 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Shmt1P50431 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Shmt1P50431 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC14.54□□□□□ -0.08
Shmt1P50431 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC14.54□□□□□ -0.08
Shmt1P50431 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC14.54□□□□□ -0.08
Shmt1P50431 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC14.54□□□□□ -0.08
Shmt1P50431 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Gm18934-201ENSMUST00000216671 1044 ntBASIC14.54□□□□□ -0.08
Shmt1P50431 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Shmt1P50431 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Shmt1P50431 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC14.54□□□□□ -0.08
Shmt1P50431 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
Shmt1P50431 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Shmt1P50431 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Shmt1P50431 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Gm21038-201ENSMUST00000222205 1383 ntBASIC14.53□□□□□ -0.08
Shmt1P50431 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Gm11478-201ENSMUST00000117851 599 ntBASIC14.53□□□□□ -0.08
Shmt1P50431 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Gm12485-201ENSMUST00000119641 291 ntBASIC14.53□□□□□ -0.08
Shmt1P50431 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC14.53□□□□□ -0.08
Shmt1P50431 Gm18307-201ENSMUST00000206864 949 ntBASIC14.53□□□□□ -0.08
Shmt1P50431 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC14.53□□□□□ -0.08
Shmt1P50431 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC14.53□□□□□ -0.08
Shmt1P50431 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Shmt1P50431 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Shmt1P50431 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
Shmt1P50431 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Shmt1P50431 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC14.53□□□□□ -0.08
Shmt1P50431 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
Shmt1P50431 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Shmt1P50431 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
Shmt1P50431 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
Shmt1P50431 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
Shmt1P50431 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC14.52□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 49.4 ms