Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ddx56Q9D0R4 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ddx56Q9D0R4 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Ddx56Q9D0R4 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC14.52□□□□□ -0.08
Ddx56Q9D0R4 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ddx56Q9D0R4 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ddx56Q9D0R4 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ddx56Q9D0R4 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ddx56Q9D0R4 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ddx56Q9D0R4 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Ddx56Q9D0R4 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ddx56Q9D0R4 Gm4875-201ENSMUST00000118257 786 ntBASIC14.52□□□□□ -0.09
Ddx56Q9D0R4 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ddx56Q9D0R4 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC14.52□□□□□ -0.09
Ddx56Q9D0R4 Gm43868-201ENSMUST00000205187 2114 ntBASIC14.52□□□□□ -0.09
Ddx56Q9D0R4 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC14.52□□□□□ -0.09
Ddx56Q9D0R4 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ddx56Q9D0R4 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ddx56Q9D0R4 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Ddx56Q9D0R4 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ddx56Q9D0R4 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ddx56Q9D0R4 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ddx56Q9D0R4 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Ddx56Q9D0R4 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ddx56Q9D0R4 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC14.52□□□□□ -0.09
Ddx56Q9D0R4 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC14.52□□□□□ -0.09
Ddx56Q9D0R4 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ddx56Q9D0R4 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ddx56Q9D0R4 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ddx56Q9D0R4 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ddx56Q9D0R4 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Gm7390-201ENSMUST00000212452 1216 ntBASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ddx56Q9D0R4 AC124751.1-201ENSMUST00000222716 1408 ntBASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Gm6912-201ENSMUST00000117218 544 ntBASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Gm15920-201ENSMUST00000118998 402 ntBASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx56Q9D0R4 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx56Q9D0R4 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC14.49□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 41.7 ms