Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC16.59■□□□□ 0.25
Ccdc9Q8VC31 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Ccdc9Q8VC31 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ccdc9Q8VC31 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ccdc9Q8VC31 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ccdc9Q8VC31 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ccdc9Q8VC31 Gm45242-201ENSMUST00000210666 2129 ntBASIC16.58■□□□□ 0.25
Ccdc9Q8VC31 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
Ccdc9Q8VC31 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Ccdc9Q8VC31 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Ccdc9Q8VC31 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc9Q8VC31 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc9Q8VC31 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
Ccdc9Q8VC31 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
Ccdc9Q8VC31 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Ccdc9Q8VC31 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
Ccdc9Q8VC31 Gm7286-201ENSMUST00000182691 1007 ntBASIC16.58■□□□□ 0.24
Ccdc9Q8VC31 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC16.58■□□□□ 0.24
Ccdc9Q8VC31 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc9Q8VC31 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc9Q8VC31 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc9Q8VC31 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Ccdc9Q8VC31 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc9Q8VC31 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc9Q8VC31 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc9Q8VC31 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc9Q8VC31 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc9Q8VC31 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc9Q8VC31 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC16.58■□□□□ 0.24
Ccdc9Q8VC31 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc9Q8VC31 Gm26857-201ENSMUST00000181580 3347 ntTSL 5 BASIC16.58■□□□□ 0.24
Ccdc9Q8VC31 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc9Q8VC31 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Gm21362-201ENSMUST00000194272 928 ntBASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc9Q8VC31 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Gm14042-201ENSMUST00000120139 833 ntBASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Gm29361-201ENSMUST00000183323 2000 ntBASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc9Q8VC31 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc9Q8VC31 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc9Q8VC31 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc9Q8VC31 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc9Q8VC31 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc9Q8VC31 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Ccdc9Q8VC31 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc9Q8VC31 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Ccdc9Q8VC31 Gm12895-201ENSMUST00000122214 226 ntBASIC16.55■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 42.9 ms