Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Gm14730-201ENSMUST00000122378 1045 ntBASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Gm26464-201ENSMUST00000157094 305 ntBASIC15.28■□□□□ 0.04
Trim47Q8C0E3 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Gm7498-201ENSMUST00000203282 1084 ntBASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 AC192088.1-201ENSMUST00000227561 301 ntBASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim47Q8C0E3 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim47Q8C0E3 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC15.27■□□□□ 0.04
Trim47Q8C0E3 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim47Q8C0E3 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim47Q8C0E3 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
Trim47Q8C0E3 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC15.27■□□□□ 0.04
Trim47Q8C0E3 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim47Q8C0E3 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim47Q8C0E3 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim47Q8C0E3 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim47Q8C0E3 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Trim47Q8C0E3 Gm27772-201ENSMUST00000184900 187 ntBASIC15.27■□□□□ 0.04
Trim47Q8C0E3 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC15.27■□□□□ 0.04
Trim47Q8C0E3 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC15.27■□□□□ 0.04
Trim47Q8C0E3 Gm7446-201ENSMUST00000221035 1240 ntBASIC15.27■□□□□ 0.04
Trim47Q8C0E3 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim47Q8C0E3 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim47Q8C0E3 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim47Q8C0E3 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.03
Trim47Q8C0E3 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim47Q8C0E3 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Trim47Q8C0E3 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Trim47Q8C0E3 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim47Q8C0E3 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim47Q8C0E3 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim47Q8C0E3 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim47Q8C0E3 Gm21451-201ENSMUST00000111062 2775 ntBASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 55.6 ms