Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Gm13689-201ENSMUST00000119360 685 ntBASIC16.25■□□□□ 0.19
Trim56Q80VI1 Gm12490-201ENSMUST00000120255 560 ntBASIC16.25■□□□□ 0.19
Trim56Q80VI1 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Trim56Q80VI1 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC16.25■□□□□ 0.19
Trim56Q80VI1 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Gm12626-201ENSMUST00000117339 1983 ntBASIC16.24■□□□□ 0.19
Trim56Q80VI1 Gm12623-201ENSMUST00000119849 1983 ntBASIC16.24■□□□□ 0.19
Trim56Q80VI1 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC16.24■□□□□ 0.19
Trim56Q80VI1 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Gm8515-201ENSMUST00000194852 576 ntBASIC16.24■□□□□ 0.19
Trim56Q80VI1 Gm18307-201ENSMUST00000206864 949 ntBASIC16.24■□□□□ 0.19
Trim56Q80VI1 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Gm45384-201ENSMUST00000210451 277 ntBASIC16.24■□□□□ 0.19
Trim56Q80VI1 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Arhgef33-209ENSMUST00000225223 714 ntBASIC16.24■□□□□ 0.19
Trim56Q80VI1 AC192088.1-201ENSMUST00000227561 301 ntBASIC16.24■□□□□ 0.19
Trim56Q80VI1 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC16.24■□□□□ 0.19
Trim56Q80VI1 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC16.24■□□□□ 0.19
Trim56Q80VI1 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trim56Q80VI1 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC16.23■□□□□ 0.19
Trim56Q80VI1 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim56Q80VI1 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms