Protein–RNA interactions for Protein: Q6IFX4

Krt39, Keratin, type I cytoskeletal 39, mousemouse

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Krt39Q6IFX4 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Krt39Q6IFX4 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Krt39Q6IFX4 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Krt39Q6IFX4 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Gm29741-201ENSMUST00000192667 421 ntBASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Gm18027-201ENSMUST00000218947 619 ntBASIC15.27■□□□□ 0.04
Krt39Q6IFX4 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Krt39Q6IFX4 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Krt39Q6IFX4 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Krt39Q6IFX4 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Krt39Q6IFX4 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Krt39Q6IFX4 Gm37861-201ENSMUST00000193534 2869 ntBASIC15.27■□□□□ 0.03
Krt39Q6IFX4 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Krt39Q6IFX4 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Krt39Q6IFX4 AC159196.2-201ENSMUST00000224082 1622 ntBASIC15.27■□□□□ 0.03
Krt39Q6IFX4 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Krt39Q6IFX4 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC15.27■□□□□ 0.03
Krt39Q6IFX4 Gm8337-201ENSMUST00000187358 1938 ntBASIC15.27■□□□□ 0.03
Krt39Q6IFX4 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Krt39Q6IFX4 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Krt39Q6IFX4 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Gm9924-202ENSMUST00000192760 2311 ntBASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Gm45667-201ENSMUST00000210380 1316 ntBASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Gm3809-201ENSMUST00000180973 1006 ntBASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Krt39Q6IFX4 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Gm18889-201ENSMUST00000174284 929 ntBASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Gm44335-201ENSMUST00000196879 141 ntBASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Gm44297-201ENSMUST00000198304 141 ntBASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Gm44346-201ENSMUST00000198851 141 ntBASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Krt39Q6IFX4 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms