Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm12957-201ENSMUST00000117835 377 ntBASIC17.79■□□□□ 0.44
Trim28Q62318 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim28Q62318 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC17.79■□□□□ 0.44
Trim28Q62318 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC17.79■□□□□ 0.44
Trim28Q62318 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim28Q62318 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim28Q62318 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim28Q62318 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trim28Q62318 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim28Q62318 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
Trim28Q62318 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim28Q62318 Gm43056-201ENSMUST00000197865 2791 ntBASIC17.79■□□□□ 0.44
Trim28Q62318 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim28Q62318 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim28Q62318 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim28Q62318 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim28Q62318 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Trim28Q62318 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim28Q62318 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim28Q62318 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim28Q62318 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Trim28Q62318 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim28Q62318 Gm21451-201ENSMUST00000111062 2775 ntBASIC17.78■□□□□ 0.44
Trim28Q62318 Gm6447-201ENSMUST00000118905 835 ntBASIC17.78■□□□□ 0.44
Trim28Q62318 Gm12384-201ENSMUST00000119228 919 ntBASIC17.78■□□□□ 0.44
Trim28Q62318 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim28Q62318 Gm4271-201ENSMUST00000174444 973 ntBASIC17.78■□□□□ 0.44
Trim28Q62318 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim28Q62318 Gm37497-201ENSMUST00000195830 798 ntBASIC17.78■□□□□ 0.44
Trim28Q62318 AC126253.1-201ENSMUST00000227974 824 ntBASIC17.78■□□□□ 0.44
Trim28Q62318 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim28Q62318 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim28Q62318 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Trim28Q62318 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim28Q62318 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim28Q62318 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim28Q62318 Gm10676-201ENSMUST00000098778 3221 ntBASIC17.78■□□□□ 0.44
Trim28Q62318 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim28Q62318 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim28Q62318 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC17.78■□□□□ 0.44
Trim28Q62318 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim28Q62318 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim28Q62318 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim28Q62318 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim28Q62318 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim28Q62318 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Trim28Q62318 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Trim28Q62318 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim28Q62318 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim28Q62318 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim28Q62318 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC17.77■□□□□ 0.44
Trim28Q62318 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim28Q62318 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trim28Q62318 Gm27514-201ENSMUST00000183692 110 ntBASIC17.77■□□□□ 0.44
Trim28Q62318 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC17.77■□□□□ 0.44
Trim28Q62318 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim28Q62318 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim28Q62318 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Trim28Q62318 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC17.77■□□□□ 0.44
Trim28Q62318 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim28Q62318 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim28Q62318 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim28Q62318 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Trim28Q62318 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.43
Trim28Q62318 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trim28Q62318 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Trim28Q62318 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim28Q62318 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim28Q62318 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim28Q62318 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim28Q62318 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim28Q62318 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC17.76■□□□□ 0.43
Trim28Q62318 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC17.76■□□□□ 0.43
Trim28Q62318 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim28Q62318 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim28Q62318 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim28Q62318 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim28Q62318 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim28Q62318 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC17.76■□□□□ 0.43
Trim28Q62318 Gm27682-201ENSMUST00000183930 110 ntBASIC17.76■□□□□ 0.43
Trim28Q62318 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim28Q62318 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Trim28Q62318 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC17.76■□□□□ 0.43
Trim28Q62318 Gm43818-201ENSMUST00000200605 466 ntBASIC17.76■□□□□ 0.43
Trim28Q62318 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim28Q62318 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim28Q62318 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Trim28Q62318 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim28Q62318 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Trim28Q62318 Gm37133-201ENSMUST00000192705 1922 ntBASIC17.76■□□□□ 0.43
Trim28Q62318 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim28Q62318 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim28Q62318 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim28Q62318 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim28Q62318 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim28Q62318 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC17.75■□□□□ 0.43
Trim28Q62318 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim28Q62318 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim28Q62318 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim28Q62318 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 49.1 ms