Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Gm15321-201ENSMUST00000121290 288 ntBASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Gm25925-201ENSMUST00000158314 306 ntBASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Upf3bQ3ULL6 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Upf3bQ3ULL6 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Upf3bQ3ULL6 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Upf3bQ3ULL6 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Upf3bQ3ULL6 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Upf3bQ3ULL6 Gm14452-201ENSMUST00000118680 1632 ntBASIC14.77□□□□□ -0.04
Upf3bQ3ULL6 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Upf3bQ3ULL6 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Upf3bQ3ULL6 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Upf3bQ3ULL6 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Upf3bQ3ULL6 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC14.77□□□□□ -0.04
Upf3bQ3ULL6 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Upf3bQ3ULL6 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Upf3bQ3ULL6 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Upf3bQ3ULL6 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
Upf3bQ3ULL6 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Upf3bQ3ULL6 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Upf3bQ3ULL6 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Upf3bQ3ULL6 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Upf3bQ3ULL6 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Gm21854-201ENSMUST00000179901 471 ntBASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Gm4971-201ENSMUST00000205991 1108 ntBASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 AC125206.2-201ENSMUST00000217454 574 ntBASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Zkscan14-203ENSMUST00000198959 2243 ntBASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Upf3bQ3ULL6 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Gm42690-201ENSMUST00000197921 1836 ntBASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC14.76□□□□□ -0.05
Upf3bQ3ULL6 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 48.3 ms