Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Gm37795-201ENSMUST00000194216 2459 ntBASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 AC131187.1-201ENSMUST00000224567 809 ntBASIC13.43□□□□□ -0.26
Col28a1Q2UY11 AC123645.1-201ENSMUST00000228469 605 ntBASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 AC238940.1-201ENSMUST00000225106 1858 ntBASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Gpr146-202ENSMUST00000053120 1040 ntBASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Gm37861-201ENSMUST00000193534 2869 ntBASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Gm9924-202ENSMUST00000192760 2311 ntBASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
Col28a1Q2UY11 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC13.42□□□□□ -0.26
Col28a1Q2UY11 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Gm43125-201ENSMUST00000201724 730 ntBASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Gm9347-201ENSMUST00000211473 1607 ntBASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC13.41□□□□□ -0.26
Col28a1Q2UY11 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms